miRNA display CGI


Results 81 - 100 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 197299 0.71 0.902921
Target:  5'- gGCGcCCgcCGCCgaggccGCGCGGCGGCuGCu -3'
miRNA:   3'- -CGCuGGaaGCGGa-----CGUGCUGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 82921 0.7 0.909007
Target:  5'- aGCGGCUggaggCGCagCUGCGCGGCA--AGCa -3'
miRNA:   3'- -CGCUGGaa---GCG--GACGUGCUGUugUCG- -5'
29975 5' -53.5 NC_006273.1 + 88587 0.7 0.909007
Target:  5'- gGCGGCCaugggCGCCgGCACGcCuGCGGUc -3'
miRNA:   3'- -CGCUGGaa---GCGGaCGUGCuGuUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 121742 0.7 0.909007
Target:  5'- cGCG-CCUgccacaUCGCUUGCcCGACGcgugaauaACAGCg -3'
miRNA:   3'- -CGCuGGA------AGCGGACGuGCUGU--------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 192230 0.7 0.909007
Target:  5'- uGCGGCgaaaaaCGCCUGCAcCGGCGuACGGUg -3'
miRNA:   3'- -CGCUGgaa---GCGGACGU-GCUGU-UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 148666 0.7 0.909007
Target:  5'- cCGGCCUggagGUCUGCGCG-CAGCuGCu -3'
miRNA:   3'- cGCUGGAag--CGGACGUGCuGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 232883 0.7 0.914288
Target:  5'- uGCGGCUcgcgCGCCcacaGCGCGGCGcgcgggugcagguGCAGCg -3'
miRNA:   3'- -CGCUGGaa--GCGGa---CGUGCUGU-------------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 37990 0.7 0.914288
Target:  5'- uGCGGCUcgcgCGCCcacaGCGCGGCGcgcgggugcagguGCAGCg -3'
miRNA:   3'- -CGCUGGaa--GCGGa---CGUGCUGU-------------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 112199 0.7 0.914864
Target:  5'- cGCGugCUUCGgCgguUGCugGAgGacGCGGCg -3'
miRNA:   3'- -CGCugGAAGCgG---ACGugCUgU--UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 63918 0.7 0.914864
Target:  5'- aGCG-CCUgcugaguguUCGCgUGCGCGuacgucagauCAGCAGCg -3'
miRNA:   3'- -CGCuGGA---------AGCGgACGUGCu---------GUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 137202 0.7 0.914864
Target:  5'- aGCGAgCUcgUCGCCaGCGCGAgCGcuCGGCg -3'
miRNA:   3'- -CGCUgGA--AGCGGaCGUGCU-GUu-GUCG- -5'
29975 5' -53.5 NC_006273.1 + 138163 0.7 0.914864
Target:  5'- gGCGGCCacgGCCUGCG-GGCAggcggguuGCAGCu -3'
miRNA:   3'- -CGCUGGaagCGGACGUgCUGU--------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 24364 0.7 0.914864
Target:  5'- uCGugUUUCGgCgGCuguuCGACAGCGGCa -3'
miRNA:   3'- cGCugGAAGCgGaCGu---GCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 43973 0.7 0.914864
Target:  5'- gGCGAUC-UCGC--GCuCGACGACGGCu -3'
miRNA:   3'- -CGCUGGaAGCGgaCGuGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 20388 0.7 0.914864
Target:  5'- uGCGACggUCGCUgcCACaGCAGCGGCg -3'
miRNA:   3'- -CGCUGgaAGCGGacGUGcUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 102085 0.7 0.92049
Target:  5'- uGCGAuguagcagaaaaCCgcCGCUUGCGCccgaGACGGCGGCa -3'
miRNA:   3'- -CGCU------------GGaaGCGGACGUG----CUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 117147 0.7 0.92049
Target:  5'- gGCGAgCguuUCGCCUGagGCGGCGugcguuauuaaaGCGGCg -3'
miRNA:   3'- -CGCUgGa--AGCGGACg-UGCUGU------------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 21711 0.7 0.92049
Target:  5'- cGCaGGCCUUUGUCgGCGCGGCucuucucgcccuGGCGGUa -3'
miRNA:   3'- -CG-CUGGAAGCGGaCGUGCUG------------UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 87518 0.7 0.925886
Target:  5'- uCGGagUUUGCCaGCGCGGCGGCGGUc -3'
miRNA:   3'- cGCUggAAGCGGaCGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 105365 0.7 0.925886
Target:  5'- aGUGACCgugaugUCGCCgucacccgaGCcCGuGCAACAGCa -3'
miRNA:   3'- -CGCUGGa-----AGCGGa--------CGuGC-UGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.