miRNA display CGI


Results 101 - 120 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 86520 0.7 0.925886
Target:  5'- --cACCgUCGCCgucgucaCGCGGCAGCGGCg -3'
miRNA:   3'- cgcUGGaAGCGGac-----GUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 80387 0.7 0.925886
Target:  5'- aGCGGCg---GCCgugGCgGCGGCAGCGGCg -3'
miRNA:   3'- -CGCUGgaagCGGa--CG-UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 163458 0.7 0.925886
Target:  5'- cGCGGCUUgUGCCgUGUACGAuCAcCGGCu -3'
miRNA:   3'- -CGCUGGAaGCGG-ACGUGCU-GUuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 45598 0.7 0.925886
Target:  5'- gGCGGCCaUgGCCgcgGCucuACaACAACAGCa -3'
miRNA:   3'- -CGCUGGaAgCGGa--CG---UGcUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 135770 0.7 0.925886
Target:  5'- aCG-CCgUCGCCUucuCACGGCGGCAGUc -3'
miRNA:   3'- cGCuGGaAGCGGAc--GUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 131831 0.7 0.925886
Target:  5'- gGCGACCa--GCCcGCACGGCcuGgGGCu -3'
miRNA:   3'- -CGCUGGaagCGGaCGUGCUGu-UgUCG- -5'
29975 5' -53.5 NC_006273.1 + 88253 0.7 0.925886
Target:  5'- cGCGACaUUUCGUacaUGgGCGACAgccucACAGCc -3'
miRNA:   3'- -CGCUG-GAAGCGg--ACgUGCUGU-----UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 115406 0.7 0.93105
Target:  5'- aGCGGCgg-CG-CUGUACGGCAGCGGg -3'
miRNA:   3'- -CGCUGgaaGCgGACGUGCUGUUGUCg -5'
29975 5' -53.5 NC_006273.1 + 68209 0.7 0.93105
Target:  5'- cGCGGCCgcugCGCCcGC-CGuggccacCAACGGCg -3'
miRNA:   3'- -CGCUGGaa--GCGGaCGuGCu------GUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 196513 0.7 0.93105
Target:  5'- uGCGGCUguacCGCUgcaaccgGCugGGCGugGGCa -3'
miRNA:   3'- -CGCUGGaa--GCGGa------CGugCUGUugUCG- -5'
29975 5' -53.5 NC_006273.1 + 44793 0.7 0.93105
Target:  5'- cGCGGCCgaugggCGCCgGCggACGugacuCGGCAGCc -3'
miRNA:   3'- -CGCUGGaa----GCGGaCG--UGCu----GUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 144667 0.7 0.93105
Target:  5'- gGCGGCgUUgCGgCaguuugUGCACGACAGuCAGCa -3'
miRNA:   3'- -CGCUGgAA-GCgG------ACGUGCUGUU-GUCG- -5'
29975 5' -53.5 NC_006273.1 + 1620 0.7 0.93105
Target:  5'- uGCGGCUguacCGCUgcaaccgGCugGGCGugGGCa -3'
miRNA:   3'- -CGCUGGaa--GCGGa------CGugCUGUugUCG- -5'
29975 5' -53.5 NC_006273.1 + 153801 0.7 0.933051
Target:  5'- cGCGGCCgcCGCCUGCGagGACcucucggagcugugcGAgAGCa -3'
miRNA:   3'- -CGCUGGaaGCGGACGUg-CUG---------------UUgUCG- -5'
29975 5' -53.5 NC_006273.1 + 34236 0.69 0.935983
Target:  5'- cGCGGCacagggcCGCCgGCA-GGCAGCGGCc -3'
miRNA:   3'- -CGCUGgaa----GCGGaCGUgCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 101913 0.69 0.937891
Target:  5'- aGCGuCCg-CGCCUGCACGccGCcgugacugcgauaauAACGGCg -3'
miRNA:   3'- -CGCuGGaaGCGGACGUGC--UG---------------UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 33229 0.69 0.940685
Target:  5'- aGCGcACCgaggGCCccgggGCgGCGACGACGGCg -3'
miRNA:   3'- -CGC-UGGaag-CGGa----CG-UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 20214 0.69 0.940685
Target:  5'- aGUGACaa-CGCa-GUGCGGCGACGGCa -3'
miRNA:   3'- -CGCUGgaaGCGgaCGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 30733 0.69 0.940685
Target:  5'- cGCGACCgccuagugUGCCcucgcUGCcCGAgAACGGCg -3'
miRNA:   3'- -CGCUGGaa------GCGG-----ACGuGCUgUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 118113 0.69 0.940685
Target:  5'- cGCGAUCUguUUGCC-GCGCGGCAG-AGUu -3'
miRNA:   3'- -CGCUGGA--AGCGGaCGUGCUGUUgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.