miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 70184 0.66 0.990187
Target:  5'- aCGACCUgUGCCgcgGCuACGACcuCAcGCg -3'
miRNA:   3'- cGCUGGAaGCGGa--CG-UGCUGuuGU-CG- -5'
29975 5' -53.5 NC_006273.1 + 147409 0.66 0.990187
Target:  5'- cGCGcCCaguggCGUCgGCGCGGCGucCGGCg -3'
miRNA:   3'- -CGCuGGaa---GCGGaCGUGCUGUu-GUCG- -5'
29975 5' -53.5 NC_006273.1 + 233512 0.66 0.990187
Target:  5'- cGUGugCgcgaaaGCCUGUuCG-CGGCAGCg -3'
miRNA:   3'- -CGCugGaag---CGGACGuGCuGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 147991 0.66 0.989809
Target:  5'- gGCGGCggUgguggaggagguugCGCCgcaaGCgGCGGCAACAGCu -3'
miRNA:   3'- -CGCUGgaA--------------GCGGa---CG-UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 74609 0.66 0.98968
Target:  5'- cGUGACUgcaggucgcgcagUCGCCgUGCACGuACuugaggaaGGCGGCg -3'
miRNA:   3'- -CGCUGGa------------AGCGG-ACGUGC-UG--------UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 118597 0.66 0.989419
Target:  5'- cGCGGCCUccacgucgucgcagCGCCgGCugGAgAGCgagaGGCc -3'
miRNA:   3'- -CGCUGGAa-------------GCGGaCGugCUgUUG----UCG- -5'
29975 5' -53.5 NC_006273.1 + 179009 0.66 0.988882
Target:  5'- cGCGAUggagaaaaCGCCgGCGgaGACGACGGCg -3'
miRNA:   3'- -CGCUGgaa-----GCGGaCGUg-CUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 16156 0.66 0.988882
Target:  5'- cGCGACCaa---CUGCugGACGACGu- -3'
miRNA:   3'- -CGCUGGaagcgGACGugCUGUUGUcg -5'
29975 5' -53.5 NC_006273.1 + 91226 0.66 0.988882
Target:  5'- gGCGAUC-UCGgC-GCGCGAggcuuCGGCGGCg -3'
miRNA:   3'- -CGCUGGaAGCgGaCGUGCU-----GUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 70327 0.66 0.988882
Target:  5'- cGCG-CCgugCGUCUGCcCGugAGCAccGCu -3'
miRNA:   3'- -CGCuGGaa-GCGGACGuGCugUUGU--CG- -5'
29975 5' -53.5 NC_006273.1 + 40490 0.66 0.988882
Target:  5'- cCGACCgcCGCCggUGCGgGACAGggcuaAGCg -3'
miRNA:   3'- cGCUGGaaGCGG--ACGUgCUGUUg----UCG- -5'
29975 5' -53.5 NC_006273.1 + 145011 0.66 0.988882
Target:  5'- gGUGuAUCUccagUCGUCgGCGCGGCAuccCAGCg -3'
miRNA:   3'- -CGC-UGGA----AGCGGaCGUGCUGUu--GUCG- -5'
29975 5' -53.5 NC_006273.1 + 140733 0.66 0.988882
Target:  5'- cGgGGCCggCGCUUGUGCGGucgaGACgAGCg -3'
miRNA:   3'- -CgCUGGaaGCGGACGUGCUg---UUG-UCG- -5'
29975 5' -53.5 NC_006273.1 + 204195 0.66 0.988882
Target:  5'- gGCaGCCUggaCGCCgGC-CGGCAAUggAGCa -3'
miRNA:   3'- -CGcUGGAa--GCGGaCGuGCUGUUG--UCG- -5'
29975 5' -53.5 NC_006273.1 + 552 0.66 0.988882
Target:  5'- cCGACCgcCGCCggUGCGgGACAGggcuaAGCg -3'
miRNA:   3'- cGCUGGaaGCGG--ACGUgCUGUUg----UCG- -5'
29975 5' -53.5 NC_006273.1 + 87598 0.66 0.988882
Target:  5'- uGCGacGCCguccgUCGCC-GCuguuGCGGCggUAGCu -3'
miRNA:   3'- -CGC--UGGa----AGCGGaCG----UGCUGuuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 135400 0.66 0.988882
Target:  5'- cGCGcuGCUUUCGCaC-GCACcugugugaucugGGCAGCGGCu -3'
miRNA:   3'- -CGC--UGGAAGCG-GaCGUG------------CUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 144200 0.66 0.988882
Target:  5'- cGUGGCCga-GCg-GUGCGACGAcCGGCa -3'
miRNA:   3'- -CGCUGGaagCGgaCGUGCUGUU-GUCG- -5'
29975 5' -53.5 NC_006273.1 + 82967 0.66 0.988882
Target:  5'- gGCGGCCgaacCGCUggcuuaugaGCGCGACAAgCuGCu -3'
miRNA:   3'- -CGCUGGaa--GCGGa--------CGUGCUGUU-GuCG- -5'
29975 5' -53.5 NC_006273.1 + 162216 0.66 0.988744
Target:  5'- cGCGucuaccGCCUccgcCGUCUGCGuguccucguugggUGGCAGCGGCg -3'
miRNA:   3'- -CGC------UGGAa---GCGGACGU-------------GCUGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.