miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 2202 0.66 0.98587
Target:  5'- aCGACCcgcacauggCGCUggGCACGAC-GCGGUg -3'
miRNA:   3'- cGCUGGaa-------GCGGa-CGUGCUGuUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 81422 0.66 0.98587
Target:  5'- gGCGaACCgaCGCagaugaUGCAgGGCAcGCGGCg -3'
miRNA:   3'- -CGC-UGGaaGCGg-----ACGUgCUGU-UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 116432 0.66 0.98587
Target:  5'- gGCGGCUUucUCGCCcGCuACGAC--CAGUc -3'
miRNA:   3'- -CGCUGGA--AGCGGaCG-UGCUGuuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 185825 0.66 0.98587
Target:  5'- uGCGACCacUUC-CacacuaUGCGCGACuacCAGCg -3'
miRNA:   3'- -CGCUGG--AAGcGg-----ACGUGCUGuu-GUCG- -5'
29975 5' -53.5 NC_006273.1 + 95517 0.66 0.98587
Target:  5'- gGCGGCCggaGaCUGCGC--CGACAGCu -3'
miRNA:   3'- -CGCUGGaagCgGACGUGcuGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 99289 0.66 0.98587
Target:  5'- cGCGAUCgcCGCC--CACGGCGuccuCGGCg -3'
miRNA:   3'- -CGCUGGaaGCGGacGUGCUGUu---GUCG- -5'
29975 5' -53.5 NC_006273.1 + 101635 0.66 0.98587
Target:  5'- cGCGucACgCUg-GCCgaagGCACGACGGCAcGCu -3'
miRNA:   3'- -CGC--UG-GAagCGGa---CGUGCUGUUGU-CG- -5'
29975 5' -53.5 NC_006273.1 + 171180 0.66 0.98587
Target:  5'- cGCGACCccgccgaGUCUGCACGuuGGguGUg -3'
miRNA:   3'- -CGCUGGaag----CGGACGUGCugUUguCG- -5'
29975 5' -53.5 NC_006273.1 + 30576 0.66 0.98587
Target:  5'- uCGuCCUUCgaGCUcgUGCGCGAgacCGGCGGCa -3'
miRNA:   3'- cGCuGGAAG--CGG--ACGUGCU---GUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 130565 0.66 0.98587
Target:  5'- cGCGcACUUgcucuggcaUUGCCUauagaGCGGCAGCAGCu -3'
miRNA:   3'- -CGC-UGGA---------AGCGGAcg---UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 46113 0.66 0.985704
Target:  5'- uGCGGgcagaacCCUcCGUCUccaACGACGACGGCa -3'
miRNA:   3'- -CGCU-------GGAaGCGGAcg-UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 29882 0.66 0.985704
Target:  5'- aGCGGUCUUCuUCUGCugauccgGCGACAACAcGCc -3'
miRNA:   3'- -CGCUGGAAGcGGACG-------UGCUGUUGU-CG- -5'
29975 5' -53.5 NC_006273.1 + 118027 0.66 0.985704
Target:  5'- cGCcGCCUcUGCCgGCuccgagggagaaaGCGACGGCGGUg -3'
miRNA:   3'- -CGcUGGAaGCGGaCG-------------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 113347 0.67 0.984147
Target:  5'- cGCGACgUgccCGUCuuugUGCACGA--ACAGCa -3'
miRNA:   3'- -CGCUGgAa--GCGG----ACGUGCUguUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 200249 0.67 0.984147
Target:  5'- aGCaGCCauacaUCGCCcgcGUACGACGuCAGCg -3'
miRNA:   3'- -CGcUGGa----AGCGGa--CGUGCUGUuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 163486 0.67 0.984147
Target:  5'- cUGGCUUUCGacgucauucugcCCUGCGCGGCAcGCAccuGCg -3'
miRNA:   3'- cGCUGGAAGC------------GGACGUGCUGU-UGU---CG- -5'
29975 5' -53.5 NC_006273.1 + 963 0.67 0.984147
Target:  5'- gGCGugCUgggCGCCgGCGcCGGUAACGGg -3'
miRNA:   3'- -CGCugGAa--GCGGaCGU-GCUGUUGUCg -5'
29975 5' -53.5 NC_006273.1 + 170705 0.67 0.984147
Target:  5'- aGCG-CCUcgGUCUGCAgGACGGC-GCu -3'
miRNA:   3'- -CGCuGGAagCGGACGUgCUGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 196880 0.67 0.984147
Target:  5'- aCGACg-UCGCC-GCcaGCGGCgAGCGGCa -3'
miRNA:   3'- cGCUGgaAGCGGaCG--UGCUG-UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 135352 0.67 0.98227
Target:  5'- cCG-UCUUUGCCgGUACGACAACGa- -3'
miRNA:   3'- cGCuGGAAGCGGaCGUGCUGUUGUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.