miRNA display CGI


Results 81 - 100 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 217309 0.67 0.98227
Target:  5'- gGCGGCCagagaacgugCGUaaauCUGCGgGAUAGCGGCc -3'
miRNA:   3'- -CGCUGGaa--------GCG----GACGUgCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 71998 0.67 0.98227
Target:  5'- gGCGGuCC-UCGCgacgCUGCugugguugACGACGACAGUc -3'
miRNA:   3'- -CGCU-GGaAGCG----GACG--------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 47278 0.67 0.98227
Target:  5'- cGUGGgCUggaaCUUGCGCGGCAacACAGCa -3'
miRNA:   3'- -CGCUgGAagc-GGACGUGCUGU--UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 76512 0.67 0.98227
Target:  5'- cCGACCUguugCGCgaaUGCACGuCGccgcucggcGCGGCg -3'
miRNA:   3'- cGCUGGAa---GCGg--ACGUGCuGU---------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 41368 0.67 0.98227
Target:  5'- aGCGACauguugCUUCGUCUGUgcacugccGCGACA--AGCa -3'
miRNA:   3'- -CGCUG------GAAGCGGACG--------UGCUGUugUCG- -5'
29975 5' -53.5 NC_006273.1 + 135352 0.67 0.98227
Target:  5'- cCG-UCUUUGCCgGUACGACAACGa- -3'
miRNA:   3'- cGCuGGAAGCGGaCGUGCUGUUGUcg -5'
29975 5' -53.5 NC_006273.1 + 99831 0.67 0.982073
Target:  5'- uGCGACggUgGCUggGCgggaggaGCGGCGGCGGCg -3'
miRNA:   3'- -CGCUGgaAgCGGa-CG-------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 196632 0.67 0.98023
Target:  5'- uGCG-CCggcgguggGCCgGCACGACggUGGCa -3'
miRNA:   3'- -CGCuGGaag-----CGGaCGUGCUGuuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 129178 0.67 0.98023
Target:  5'- cGCGGCa----CCUGUACGugGaACAGCa -3'
miRNA:   3'- -CGCUGgaagcGGACGUGCugU-UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 63194 0.67 0.98023
Target:  5'- cGCGGCC-UCGCCUuugccuccGCuuGACGGCGu- -3'
miRNA:   3'- -CGCUGGaAGCGGA--------CGugCUGUUGUcg -5'
29975 5' -53.5 NC_006273.1 + 79917 0.67 0.98023
Target:  5'- aGCGugUa-CGUCUGCGCcGGCGACAcauGCg -3'
miRNA:   3'- -CGCugGaaGCGGACGUG-CUGUUGU---CG- -5'
29975 5' -53.5 NC_006273.1 + 1740 0.67 0.98023
Target:  5'- uGCG-CCggcgguggGCCgGCACGACggUGGCa -3'
miRNA:   3'- -CGCuGGaag-----CGGaCGUGCUGuuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 83650 0.67 0.98023
Target:  5'- -aGGCCgugCGCaaggcGCGCGAC-GCGGCg -3'
miRNA:   3'- cgCUGGaa-GCGga---CGUGCUGuUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 133225 0.67 0.98023
Target:  5'- gGUGcucGCCUaUCaCCUGUACGgugGCGACGGCg -3'
miRNA:   3'- -CGC---UGGA-AGcGGACGUGC---UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 70820 0.67 0.98023
Target:  5'- aGCGGCCUg-GCCUucgGCACGcUGGCGGg -3'
miRNA:   3'- -CGCUGGAagCGGA---CGUGCuGUUGUCg -5'
29975 5' -53.5 NC_006273.1 + 122847 0.67 0.98023
Target:  5'- gGCGACCg-CGUCagacgGgGCGGCGACGGg -3'
miRNA:   3'- -CGCUGGaaGCGGa----CgUGCUGUUGUCg -5'
29975 5' -53.5 NC_006273.1 + 132373 0.67 0.98023
Target:  5'- cCGACUUUgauuuaCGgCUGCGCGACGGCgucuccggucuGGCg -3'
miRNA:   3'- cGCUGGAA------GCgGACGUGCUGUUG-----------UCG- -5'
29975 5' -53.5 NC_006273.1 + 176068 0.67 0.98023
Target:  5'- cGCGACUUaaCGCCg--AUGugAACAGCg -3'
miRNA:   3'- -CGCUGGAa-GCGGacgUGCugUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 148142 0.67 0.98023
Target:  5'- cUGGCCggCGCCaGaccgGACGACAGCg -3'
miRNA:   3'- cGCUGGaaGCGGaCgug-CUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 84550 0.67 0.98023
Target:  5'- cGCG-CaagUGCCUGCACGACcugcucCAGUa -3'
miRNA:   3'- -CGCuGgaaGCGGACGUGCUGuu----GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.