miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 91 0.72 0.854196
Target:  5'- gGCGACUagUUGCgUGUgcugcgguggguACGGCGACGGCg -3'
miRNA:   3'- -CGCUGGa-AGCGgACG------------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 552 0.66 0.988882
Target:  5'- cCGACCgcCGCCggUGCGgGACAGggcuaAGCg -3'
miRNA:   3'- cGCUGGaaGCGG--ACGUgCUGUUg----UCG- -5'
29975 5' -53.5 NC_006273.1 + 703 0.75 0.701493
Target:  5'- aCGGCCUUCcagaCUGCACGGCcccaaGGCGGCg -3'
miRNA:   3'- cGCUGGAAGcg--GACGUGCUG-----UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 881 0.67 0.975633
Target:  5'- gGCGGCCaUgGCCca-GCG-CAACGGCa -3'
miRNA:   3'- -CGCUGGaAgCGGacgUGCuGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 919 0.72 0.838443
Target:  5'- uGCGcaGCgCUUCGCUuuucgGgGCGGCGACGGCg -3'
miRNA:   3'- -CGC--UG-GAAGCGGa----CgUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 963 0.67 0.984147
Target:  5'- gGCGugCUgggCGCCgGCGcCGGUAACGGg -3'
miRNA:   3'- -CGCugGAa--GCGGaCGU-GCUGUUGUCg -5'
29975 5' -53.5 NC_006273.1 + 1620 0.7 0.93105
Target:  5'- uGCGGCUguacCGCUgcaaccgGCugGGCGugGGCa -3'
miRNA:   3'- -CGCUGGaa--GCGGa------CGugCUGUugUCG- -5'
29975 5' -53.5 NC_006273.1 + 1740 0.67 0.98023
Target:  5'- uGCG-CCggcgguggGCCgGCACGACggUGGCa -3'
miRNA:   3'- -CGCuGGaag-----CGGaCGUGCUGuuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 2035 0.68 0.957226
Target:  5'- gGgGACg--CGCCgUGCGCGAUGGCAGg -3'
miRNA:   3'- -CgCUGgaaGCGG-ACGUGCUGUUGUCg -5'
29975 5' -53.5 NC_006273.1 + 2166 0.72 0.854196
Target:  5'- cGCGACgg-CGgCgGCAgCGGCAGCAGCg -3'
miRNA:   3'- -CGCUGgaaGCgGaCGU-GCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 2202 0.66 0.98587
Target:  5'- aCGACCcgcacauggCGCUggGCACGAC-GCGGUg -3'
miRNA:   3'- cGCUGGaa-------GCGGa-CGUGCUGuUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 2406 0.71 0.902921
Target:  5'- gGCGcCCgcCGCCgaggccGCGCGGCGGCuGCu -3'
miRNA:   3'- -CGCuGGaaGCGGa-----CGUGCUGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 4913 0.66 0.991809
Target:  5'- cCGGCCgauUCGCCcGCcggggcuucuggagaACGccggaGCAGCAGCg -3'
miRNA:   3'- cGCUGGa--AGCGGaCG---------------UGC-----UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 7674 0.68 0.970013
Target:  5'- uCGGCCgacaUGCCgaugguaUGgGCGGCGGCGGCa -3'
miRNA:   3'- cGCUGGaa--GCGG-------ACgUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 9528 0.71 0.869171
Target:  5'- uGCGACCUUUGUg-GCGCGAUugaGACAccGCa -3'
miRNA:   3'- -CGCUGGAAGCGgaCGUGCUG---UUGU--CG- -5'
29975 5' -53.5 NC_006273.1 + 12456 1.15 0.003639
Target:  5'- uGCGACCUUCGCCUGCACGACAACAGCa -3'
miRNA:   3'- -CGCUGGAAGCGGACGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 13215 0.68 0.957226
Target:  5'- uGCGGCgUUacagCGUCUgGUGCGGCAugAGCu -3'
miRNA:   3'- -CGCUGgAA----GCGGA-CGUGCUGUugUCG- -5'
29975 5' -53.5 NC_006273.1 + 13591 0.68 0.960809
Target:  5'- gGCGGCCcgggcCGCCgUGCugGAgGGCcGCc -3'
miRNA:   3'- -CGCUGGaa---GCGG-ACGugCUgUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 15439 0.67 0.97802
Target:  5'- aGCGACgCgagCGCgaGCGgCGuauucuGCAGCAGCa -3'
miRNA:   3'- -CGCUG-Gaa-GCGgaCGU-GC------UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 16156 0.66 0.988882
Target:  5'- cGCGACCaa---CUGCugGACGACGu- -3'
miRNA:   3'- -CGCUGGaagcgGACGugCUGUUGUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.