miRNA display CGI


Results 41 - 60 of 334 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 37216 0.77 0.617332
Target:  5'- cGCGGCCgacgcgcgUGCCcaggcagaggaagGCGCGACGGCGGCg -3'
miRNA:   3'- -CGCUGGaa------GCGGa------------CGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 37409 0.66 0.986988
Target:  5'- cGCGACUgagCGCCgggGCGCGcCGcuacuuggguuuuuAUAGCc -3'
miRNA:   3'- -CGCUGGaa-GCGGa--CGUGCuGU--------------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 37637 0.66 0.987445
Target:  5'- cGCGACCcgCGCg-GCAaaaGGCAcgcuguugACGGCg -3'
miRNA:   3'- -CGCUGGaaGCGgaCGUg--CUGU--------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 37990 0.7 0.914288
Target:  5'- uGCGGCUcgcgCGCCcacaGCGCGGCGcgcgggugcagguGCAGCg -3'
miRNA:   3'- -CGCUGGaa--GCGGa---CGUGCUGU-------------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 38133 0.68 0.960809
Target:  5'- cGCGcCCagcaCGCCcGCGCGcagaaaguGCGACAGCu -3'
miRNA:   3'- -CGCuGGaa--GCGGaCGUGC--------UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 38392 0.73 0.787063
Target:  5'- cGCcGCCguccgUCGCCgccgcUGCggugGCGGCAACAGCg -3'
miRNA:   3'- -CGcUGGa----AGCGG-----ACG----UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 38487 0.68 0.971428
Target:  5'- gGCGGCCUccgucuccgugccgcUCGCC-GCugGCGGCGACGu- -3'
miRNA:   3'- -CGCUGGA---------------AGCGGaCG--UGCUGUUGUcg -5'
29975 5' -53.5 NC_006273.1 + 38791 0.67 0.97802
Target:  5'- aGCG-CCgUCGCCUcCuCGGCGcGCAGCa -3'
miRNA:   3'- -CGCuGGaAGCGGAcGuGCUGU-UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 39583 0.68 0.957226
Target:  5'- cGCGACCgaggggCGggggGCGCGGCGACAuGCc -3'
miRNA:   3'- -CGCUGGaa----GCgga-CGUGCUGUUGU-CG- -5'
29975 5' -53.5 NC_006273.1 + 40029 0.72 0.854196
Target:  5'- gGCGACUagUUGCgUGUgcugcgguggguACGGCGACGGCg -3'
miRNA:   3'- -CGCUGGa-AGCGgACG------------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 40490 0.66 0.988882
Target:  5'- cCGACCgcCGCCggUGCGgGACAGggcuaAGCg -3'
miRNA:   3'- cGCUGGaaGCGG--ACGUgCUGUUg----UCG- -5'
29975 5' -53.5 NC_006273.1 + 40857 0.72 0.838443
Target:  5'- uGCGcaGCgCUUCGCUuuucgGgGCGGCGACGGCg -3'
miRNA:   3'- -CGC--UG-GAAGCGGa----CgUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 40901 0.66 0.991369
Target:  5'- gGCGugCUgggCGCCgGCcCGGUAACGGg -3'
miRNA:   3'- -CGCugGAa--GCGGaCGuGCUGUUGUCg -5'
29975 5' -53.5 NC_006273.1 + 41368 0.67 0.98227
Target:  5'- aGCGACauguugCUUCGUCUGUgcacugccGCGACA--AGCa -3'
miRNA:   3'- -CGCUG------GAAGCGGACG--------UGCUGUugUCG- -5'
29975 5' -53.5 NC_006273.1 + 42739 0.66 0.991369
Target:  5'- gGCGACga--GCC-GCAUaGCGACGGCg -3'
miRNA:   3'- -CGCUGgaagCGGaCGUGcUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 43973 0.7 0.914864
Target:  5'- gGCGAUC-UCGC--GCuCGACGACGGCu -3'
miRNA:   3'- -CGCUGGaAGCGgaCGuGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 44793 0.7 0.93105
Target:  5'- cGCGGCCgaugggCGCCgGCggACGugacuCGGCAGCc -3'
miRNA:   3'- -CGCUGGaa----GCGGaCG--UGCu----GUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 45261 0.67 0.975633
Target:  5'- gGCGGCU---GCUcGCGCcGCAACAGCa -3'
miRNA:   3'- -CGCUGGaagCGGaCGUGcUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 45598 0.7 0.925886
Target:  5'- gGCGGCCaUgGCCgcgGCucuACaACAACAGCa -3'
miRNA:   3'- -CGCUGGaAgCGGa--CG---UGcUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 46113 0.66 0.985704
Target:  5'- uGCGGgcagaacCCUcCGUCUccaACGACGACGGCa -3'
miRNA:   3'- -CGCU-------GGAaGCGGAcg-UGCUGUUGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.