miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 47249 0.68 0.968548
Target:  5'- gGCGACCcggccCGCCggccguugaacgggGCcauguacuACGGCAGCGGCu -3'
miRNA:   3'- -CGCUGGaa---GCGGa-------------CG--------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 47278 0.67 0.98227
Target:  5'- cGUGGgCUggaaCUUGCGCGGCAacACAGCa -3'
miRNA:   3'- -CGCUgGAagc-GGACGUGCUGU--UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 47551 0.73 0.804816
Target:  5'- gGCGAgcucuuuuUCUUCuccaagaaCCUGUACGGCAACGGCg -3'
miRNA:   3'- -CGCU--------GGAAGc-------GGACGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 47831 0.68 0.964179
Target:  5'- cGCgGACCUgUCGUC-GCugGGCcuCGGCg -3'
miRNA:   3'- -CG-CUGGA-AGCGGaCGugCUGuuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 48029 0.69 0.945158
Target:  5'- aGCGuGCCUcCGCCgGaCAUGGCGgugACGGCg -3'
miRNA:   3'- -CGC-UGGAaGCGGaC-GUGCUGU---UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 48217 0.72 0.838443
Target:  5'- uCGAUCUacucagCGUCUGCACGA-AACGGCg -3'
miRNA:   3'- cGCUGGAa-----GCGGACGUGCUgUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 55766 0.68 0.973062
Target:  5'- cGCGACCgcccUCGCCgaugaGUACgGGUAGCGGUg -3'
miRNA:   3'- -CGCUGGa---AGCGGa----CGUG-CUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 56967 0.68 0.957226
Target:  5'- -aGACCguugCGgCUGgcCACGuACAACAGCg -3'
miRNA:   3'- cgCUGGaa--GCgGAC--GUGC-UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 58844 0.71 0.88605
Target:  5'- aGUGGCaCgaCGCCauaucgggacucaaGCACGGCGGCAGCa -3'
miRNA:   3'- -CGCUG-GaaGCGGa-------------CGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 61741 0.69 0.945158
Target:  5'- cGUGACCgcgagCGCCgUGCGCGccuuCGugGGUg -3'
miRNA:   3'- -CGCUGGaa---GCGG-ACGUGCu---GUugUCG- -5'
29975 5' -53.5 NC_006273.1 + 61862 0.68 0.967034
Target:  5'- cGCGACCcgcuguaccCGCCgagcaguUGCACGA--ACAGCu -3'
miRNA:   3'- -CGCUGGaa-------GCGG-------ACGUGCUguUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 61913 0.72 0.838443
Target:  5'- uGCGACa----CCaGCACGACGGCGGCg -3'
miRNA:   3'- -CGCUGgaagcGGaCGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 63194 0.67 0.98023
Target:  5'- cGCGGCC-UCGCCUuugccuccGCuuGACGGCGu- -3'
miRNA:   3'- -CGCUGGaAGCGGA--------CGugCUGUUGUcg -5'
29975 5' -53.5 NC_006273.1 + 63918 0.7 0.914864
Target:  5'- aGCG-CCUgcugaguguUCGCgUGCGCGuacgucagauCAGCAGCg -3'
miRNA:   3'- -CGCuGGA---------AGCGgACGUGCu---------GUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 64014 0.68 0.9703
Target:  5'- cGUGACCUcgaGCCaccauggGCGCGGCGguuuugguggcGCGGCc -3'
miRNA:   3'- -CGCUGGAag-CGGa------CGUGCUGU-----------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 64241 0.68 0.957226
Target:  5'- aUGACCUggccCGCggGCACGggcguuGCGGCGGCg -3'
miRNA:   3'- cGCUGGAa---GCGgaCGUGC------UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 65245 0.66 0.987445
Target:  5'- uCGACCUcaccggcgUCGuCCgagaaaGCGCGgacACGGCAGCg -3'
miRNA:   3'- cGCUGGA--------AGC-GGa-----CGUGC---UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 66152 0.71 0.874933
Target:  5'- aGCGACagCUUCGUCUGCcuGCGACccguagacuuuCAGCg -3'
miRNA:   3'- -CGCUG--GAAGCGGACG--UGCUGuu---------GUCG- -5'
29975 5' -53.5 NC_006273.1 + 66554 0.74 0.77798
Target:  5'- cGCGACCUgaaaCUGUGUGACGGCAGCu -3'
miRNA:   3'- -CGCUGGAagcgGACGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 67291 0.66 0.991369
Target:  5'- cGUGACCUacaUGCUgGCGCGcCGGCGGg -3'
miRNA:   3'- -CGCUGGAa--GCGGaCGUGCuGUUGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.