miRNA display CGI


Results 81 - 100 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 68209 0.7 0.93105
Target:  5'- cGCGGCCgcugCGCCcGC-CGuggccacCAACGGCg -3'
miRNA:   3'- -CGCUGGaa--GCGGaCGuGCu------GUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 68759 0.79 0.503027
Target:  5'- --aGCUUUCGCCUGCccaccucaugaaGCGGCGGCGGCg -3'
miRNA:   3'- cgcUGGAAGCGGACG------------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 70132 0.69 0.940685
Target:  5'- cGCGGCUacaGCgaGUGCGGCGAUGGCu -3'
miRNA:   3'- -CGCUGGaagCGgaCGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 70184 0.66 0.990187
Target:  5'- aCGACCUgUGCCgcgGCuACGACcuCAcGCg -3'
miRNA:   3'- cGCUGGAaGCGGa--CG-UGCUGuuGU-CG- -5'
29975 5' -53.5 NC_006273.1 + 70327 0.66 0.988882
Target:  5'- cGCG-CCgugCGUCUGCcCGugAGCAccGCu -3'
miRNA:   3'- -CGCuGGaa-GCGGACGuGCugUUGU--CG- -5'
29975 5' -53.5 NC_006273.1 + 70653 0.69 0.949404
Target:  5'- aCGACaCggUGCugCUGCGCGACAcggugGCGGCg -3'
miRNA:   3'- cGCUG-GaaGCG--GACGUGCUGU-----UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 70820 0.67 0.98023
Target:  5'- aGCGGCCUg-GCCUucgGCACGcUGGCGGg -3'
miRNA:   3'- -CGCUGGAagCGGA---CGUGCuGUUGUCg -5'
29975 5' -53.5 NC_006273.1 + 70918 0.71 0.869171
Target:  5'- cCGGCCUcgggUUGCCUggacgccuggGCGCGAC-GCGGCg -3'
miRNA:   3'- cGCUGGA----AGCGGA----------CGUGCUGuUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 70949 0.69 0.945158
Target:  5'- aGCGGCCgcgGCC-GCagACGACGACGGa -3'
miRNA:   3'- -CGCUGGaagCGGaCG--UGCUGUUGUCg -5'
29975 5' -53.5 NC_006273.1 + 71548 0.71 0.876352
Target:  5'- gGCGGCCgcUGCCgGCgacuuGCGACAACcggAGCa -3'
miRNA:   3'- -CGCUGGaaGCGGaCG-----UGCUGUUG---UCG- -5'
29975 5' -53.5 NC_006273.1 + 71873 0.67 0.975633
Target:  5'- -gGugUUUCGaCUGCgGCGGCAACGGg -3'
miRNA:   3'- cgCugGAAGCgGACG-UGCUGUUGUCg -5'
29975 5' -53.5 NC_006273.1 + 71998 0.67 0.98227
Target:  5'- gGCGGuCC-UCGCgacgCUGCugugguugACGACGACAGUc -3'
miRNA:   3'- -CGCU-GGaAGCG----GACG--------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 73745 0.69 0.940685
Target:  5'- gGCGGCggcgGCCgagGCcCGGCAGCGGCg -3'
miRNA:   3'- -CGCUGgaagCGGa--CGuGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 74609 0.66 0.98968
Target:  5'- cGUGACUgcaggucgcgcagUCGCCgUGCACGuACuugaggaaGGCGGCg -3'
miRNA:   3'- -CGCUGGa------------AGCGG-ACGUGC-UG--------UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 76512 0.67 0.98227
Target:  5'- cCGACCUguugCGCgaaUGCACGuCGccgcucggcGCGGCg -3'
miRNA:   3'- cGCUGGAa---GCGg--ACGUGCuGU---------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 76718 0.67 0.975633
Target:  5'- uGCGACC--CGCagUGCGcCGGCAACAuccGCg -3'
miRNA:   3'- -CGCUGGaaGCGg-ACGU-GCUGUUGU---CG- -5'
29975 5' -53.5 NC_006273.1 + 77024 0.66 0.990187
Target:  5'- gGCGugCgcaCGCC-GCGCGaACGAC-GCu -3'
miRNA:   3'- -CGCugGaa-GCGGaCGUGC-UGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 77170 0.66 0.988036
Target:  5'- cGCGcGCCcgCGCCucacgcugcacgaccUGCACGACAucuuccGCgAGCa -3'
miRNA:   3'- -CGC-UGGaaGCGG---------------ACGUGCUGU------UG-UCG- -5'
29975 5' -53.5 NC_006273.1 + 77328 0.72 0.854196
Target:  5'- uCGACaucUCGCC-GUACGGCAACgAGCa -3'
miRNA:   3'- cGCUGga-AGCGGaCGUGCUGUUG-UCG- -5'
29975 5' -53.5 NC_006273.1 + 77361 0.68 0.960809
Target:  5'- cGCG-Ca-UCGCCUGCACuucgugcgagGACAACcGCa -3'
miRNA:   3'- -CGCuGgaAGCGGACGUG----------CUGUUGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.