miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 196632 0.67 0.98023
Target:  5'- uGCG-CCggcgguggGCCgGCACGACggUGGCa -3'
miRNA:   3'- -CGCuGGaag-----CGGaCGUGCUGuuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 196513 0.7 0.93105
Target:  5'- uGCGGCUguacCGCUgcaaccgGCugGGCGugGGCa -3'
miRNA:   3'- -CGCUGGaa--GCGGa------CGugCUGUugUCG- -5'
29975 5' -53.5 NC_006273.1 + 195773 0.67 0.975633
Target:  5'- gGCGGCCaUgGCCca-GCG-CAACGGCa -3'
miRNA:   3'- -CGCUGGaAgCGGacgUGCuGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 195596 0.71 0.869171
Target:  5'- aCGGCCUUC-CagaUGCACGGCcccaaGGCGGCg -3'
miRNA:   3'- cGCUGGAAGcGg--ACGUGCUG-----UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 194876 0.85 0.240919
Target:  5'- aGCGcGCCgggUCGCCUGUcCGGCAGCAGCc -3'
miRNA:   3'- -CGC-UGGa--AGCGGACGuGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 192659 0.72 0.830291
Target:  5'- uGCGGCUcgUCGCCgugugGCGCGGCcuggcCGGCu -3'
miRNA:   3'- -CGCUGGa-AGCGGa----CGUGCUGuu---GUCG- -5'
29975 5' -53.5 NC_006273.1 + 192230 0.7 0.909007
Target:  5'- uGCGGCgaaaaaCGCCUGCAcCGGCGuACGGUg -3'
miRNA:   3'- -CGCUGgaa---GCGGACGU-GCUGU-UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 191075 0.69 0.945158
Target:  5'- -aGGCCgugUCGCCaacgucgaaUGCuACGuuGCAACAGCu -3'
miRNA:   3'- cgCUGGa--AGCGG---------ACG-UGC--UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 190137 0.68 0.956856
Target:  5'- cGCGAgCagcCGCCgggcgGCACGggcaagugcuucaGCAGCAGCu -3'
miRNA:   3'- -CGCUgGaa-GCGGa----CGUGC-------------UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 189936 0.69 0.944721
Target:  5'- cGCGACacagcCGUCUGCagcucgucggccgGCGugGGCGGCu -3'
miRNA:   3'- -CGCUGgaa--GCGGACG-------------UGCugUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 189798 0.83 0.297188
Target:  5'- cGCGGCCauggcCGCCUGCACGGCAGCuuGUa -3'
miRNA:   3'- -CGCUGGaa---GCGGACGUGCUGUUGu-CG- -5'
29975 5' -53.5 NC_006273.1 + 189018 0.75 0.691586
Target:  5'- gGCG-UCggggGCCUGUGCGACGACAGCc -3'
miRNA:   3'- -CGCuGGaag-CGGACGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 188027 0.66 0.991369
Target:  5'- uGCuAUCgUCGCCgGUuucggGCGAUGACAGCg -3'
miRNA:   3'- -CGcUGGaAGCGGaCG-----UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 186742 0.72 0.861784
Target:  5'- uGCGACCgcUGCgUGCGC--CGACGGCg -3'
miRNA:   3'- -CGCUGGaaGCGgACGUGcuGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 186468 0.72 0.830291
Target:  5'- -aGGCCgagagUCGCCUGUACGACGcCAu- -3'
miRNA:   3'- cgCUGGa----AGCGGACGUGCUGUuGUcg -5'
29975 5' -53.5 NC_006273.1 + 185865 0.66 0.987294
Target:  5'- aUGACC-UCGuCUUGcCACGcgucgaagcggucGCAGCAGCg -3'
miRNA:   3'- cGCUGGaAGC-GGAC-GUGC-------------UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 185825 0.66 0.98587
Target:  5'- uGCGACCacUUC-CacacuaUGCGCGACuacCAGCg -3'
miRNA:   3'- -CGCUGG--AAGcGg-----ACGUGCUGuu-GUCG- -5'
29975 5' -53.5 NC_006273.1 + 179009 0.66 0.988882
Target:  5'- cGCGAUggagaaaaCGCCgGCGgaGACGACGGCg -3'
miRNA:   3'- -CGCUGgaa-----GCGGaCGUg-CUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 178577 0.76 0.651563
Target:  5'- --uGCCggCgGUCUGCACGACGACGGCc -3'
miRNA:   3'- cgcUGGaaG-CGGACGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 178521 0.69 0.940685
Target:  5'- aGCGGCaaaUCGCgUG-GCGGCGGCGGUg -3'
miRNA:   3'- -CGCUGga-AGCGgACgUGCUGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.