miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 177319 0.66 0.990187
Target:  5'- gGCGACgCagUGUCUGUuccagGCGGCAcCGGCg -3'
miRNA:   3'- -CGCUG-GaaGCGGACG-----UGCUGUuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 176268 0.72 0.846414
Target:  5'- aGCGugUUaaugaagCGCUaccgUGCGCGugAGCAGCg -3'
miRNA:   3'- -CGCugGAa------GCGG----ACGUGCugUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 176068 0.67 0.98023
Target:  5'- cGCGACUUaaCGCCg--AUGugAACAGCg -3'
miRNA:   3'- -CGCUGGAa-GCGGacgUGCugUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 174645 0.66 0.991256
Target:  5'- -aGACUucgagaaUUCGUCUGaGCGGCGcugACAGCa -3'
miRNA:   3'- cgCUGG-------AAGCGGACgUGCUGU---UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 174276 0.67 0.975633
Target:  5'- aGCGACCaugaGCCgcuggagGCAUGGgAGCAGg -3'
miRNA:   3'- -CGCUGGaag-CGGa------CGUGCUgUUGUCg -5'
29975 5' -53.5 NC_006273.1 + 173052 0.66 0.988036
Target:  5'- -gGGCCUUaGCCUGCAguGCAccccccaacuuguuaGCGGCg -3'
miRNA:   3'- cgCUGGAAgCGGACGUgcUGU---------------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 171180 0.66 0.98587
Target:  5'- cGCGACCccgccgaGUCUGCACGuuGGguGUg -3'
miRNA:   3'- -CGCUGGaag----CGGACGUGCugUUguCG- -5'
29975 5' -53.5 NC_006273.1 + 170705 0.67 0.984147
Target:  5'- aGCG-CCUcgGUCUGCAgGACGGC-GCu -3'
miRNA:   3'- -CGCuGGAagCGGACGUgCUGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 167113 0.68 0.967341
Target:  5'- -gGGCCgcgUCgGCCUGC-UGAUcuAGCAGCg -3'
miRNA:   3'- cgCUGGa--AG-CGGACGuGCUG--UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 166493 0.68 0.9703
Target:  5'- gGCGACgguagUGUUUGUcgugGCGGCGGCAGCg -3'
miRNA:   3'- -CGCUGgaa--GCGGACG----UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 165680 0.69 0.940685
Target:  5'- --cACCUUCGCCgcUGCcuacGCGAuCGGCGGCc -3'
miRNA:   3'- cgcUGGAAGCGG--ACG----UGCU-GUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 165032 0.67 0.975633
Target:  5'- aGCGugauGCCcUCGg--GCGCGGCAGCGGUg -3'
miRNA:   3'- -CGC----UGGaAGCggaCGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 164447 0.68 0.971428
Target:  5'- uGCGGCCgcggcCGCUcgaugacgaugucgGCGCGGCGGCuGCu -3'
miRNA:   3'- -CGCUGGaa---GCGGa-------------CGUGCUGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 163922 0.66 0.990187
Target:  5'- uGCGAUCgcCGCC-GCcuCGAUcGCGGCg -3'
miRNA:   3'- -CGCUGGaaGCGGaCGu-GCUGuUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 163693 0.67 0.97802
Target:  5'- -aGACC---GCCUGcCACGuCGGCGGCc -3'
miRNA:   3'- cgCUGGaagCGGAC-GUGCuGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 163486 0.67 0.984147
Target:  5'- cUGGCUUUCGacgucauucugcCCUGCGCGGCAcGCAccuGCg -3'
miRNA:   3'- cGCUGGAAGC------------GGACGUGCUGU-UGU---CG- -5'
29975 5' -53.5 NC_006273.1 + 163458 0.7 0.925886
Target:  5'- cGCGGCUUgUGCCgUGUACGAuCAcCGGCu -3'
miRNA:   3'- -CGCUGGAaGCGG-ACGUGCU-GUuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 163087 0.66 0.990187
Target:  5'- aGCG-CCg-CG-CUGCGCGGCGgccucaucgGCAGCg -3'
miRNA:   3'- -CGCuGGaaGCgGACGUGCUGU---------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 162956 0.68 0.957226
Target:  5'- uGCgGGCaCUggGUCUGCACGACGAgAcGCg -3'
miRNA:   3'- -CG-CUG-GAagCGGACGUGCUGUUgU-CG- -5'
29975 5' -53.5 NC_006273.1 + 162793 0.72 0.830291
Target:  5'- aGCGGCCgcaugUCGCUgccGCugGACAcgucugaaGCGGUg -3'
miRNA:   3'- -CGCUGGa----AGCGGa--CGugCUGU--------UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.