miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 192659 0.72 0.830291
Target:  5'- uGCGGCUcgUCGCCgugugGCGCGGCcuggcCGGCu -3'
miRNA:   3'- -CGCUGGa-AGCGGa----CGUGCUGuu---GUCG- -5'
29975 5' -53.5 NC_006273.1 + 111344 0.74 0.76877
Target:  5'- cGCGGCCg-CGCC-GCugGGuuCAGCGGCg -3'
miRNA:   3'- -CGCUGGaaGCGGaCGugCU--GUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 66554 0.74 0.77798
Target:  5'- cGCGACCUgaaaCUGUGUGACGGCAGCu -3'
miRNA:   3'- -CGCUGGAagcgGACGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 38392 0.73 0.787063
Target:  5'- cGCcGCCguccgUCGCCgccgcUGCggugGCGGCAACAGCg -3'
miRNA:   3'- -CGcUGGa----AGCGG-----ACG----UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 153108 0.73 0.796011
Target:  5'- cGCGGCCcaCGCCcaaGUACGACGAC-GCc -3'
miRNA:   3'- -CGCUGGaaGCGGa--CGUGCUGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 47551 0.73 0.804816
Target:  5'- gGCGAgcucuuuuUCUUCuccaagaaCCUGUACGGCAACGGCg -3'
miRNA:   3'- -CGCU--------GGAAGc-------GGACGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 144117 0.73 0.81347
Target:  5'- cGCGACgaggGUCUGCGCGACAuuuugggucaGCGGCa -3'
miRNA:   3'- -CGCUGgaagCGGACGUGCUGU----------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 144405 0.73 0.81347
Target:  5'- aGCGGCUgUCuGCCcgGCGCcGCGGCGGCg -3'
miRNA:   3'- -CGCUGGaAG-CGGa-CGUGcUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 162793 0.72 0.830291
Target:  5'- aGCGGCCgcaugUCGCUgccGCugGACAcgucugaaGCGGUg -3'
miRNA:   3'- -CGCUGGa----AGCGGa--CGugCUGU--------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 140654 0.74 0.767842
Target:  5'- cGCGGCUacgaaUUC-CCUGCgccaacgccgcagGCGACGACGGCg -3'
miRNA:   3'- -CGCUGG-----AAGcGGACG-------------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 105659 0.74 0.750006
Target:  5'- gGCGGCCUUgcUGuCCUcCGCGugAACAGCc -3'
miRNA:   3'- -CGCUGGAA--GC-GGAcGUGCugUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 125964 0.74 0.73084
Target:  5'- cGCGGCCuUUUGuCCgUGCACcguGGCGGCGGCa -3'
miRNA:   3'- -CGCUGG-AAGC-GG-ACGUG---CUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 117013 0.77 0.575247
Target:  5'- gGCGAUCccuUUCgcucagacagcuacgGCCUGUugGGCAACAGCg -3'
miRNA:   3'- -CGCUGG---AAG---------------CGGACGugCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 37216 0.77 0.617332
Target:  5'- cGCGGCCgacgcgcgUGCCcaggcagaggaagGCGCGACGGCGGCg -3'
miRNA:   3'- -CGCUGGaa------GCGGa------------CGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 23368 0.76 0.641499
Target:  5'- aGCGGCUgcgcaUUCGCCUGCcgcauCGAUAcCAGCg -3'
miRNA:   3'- -CGCUGG-----AAGCGGACGu----GCUGUuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 189018 0.75 0.691586
Target:  5'- gGCG-UCggggGCCUGUGCGACGACAGCc -3'
miRNA:   3'- -CGCuGGaag-CGGACGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 214845 0.75 0.691586
Target:  5'- cGCGuuaGCCUccugCGCCUGCAuggUGGCGACGGUc -3'
miRNA:   3'- -CGC---UGGAa---GCGGACGU---GCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 79944 0.75 0.711344
Target:  5'- -aGAacCCgcgUCGCCggGCACGGCGGCGGUa -3'
miRNA:   3'- cgCU--GGa--AGCGGa-CGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 132398 0.75 0.711344
Target:  5'- aGCGuCCgaCGCCggguugGCACGAC-GCGGCg -3'
miRNA:   3'- -CGCuGGaaGCGGa-----CGUGCUGuUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 130114 0.75 0.721129
Target:  5'- cGCGACCUcaGCCUGCACcugGACGACu-- -3'
miRNA:   3'- -CGCUGGAagCGGACGUG---CUGUUGucg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.