Results 41 - 60 of 334 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29975 | 5' | -53.5 | NC_006273.1 | + | 214845 | 0.75 | 0.691586 |
Target: 5'- cGCGuuaGCCUccugCGCCUGCAuggUGGCGACGGUc -3' miRNA: 3'- -CGC---UGGAa---GCGGACGU---GCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 189018 | 0.75 | 0.691586 |
Target: 5'- gGCG-UCggggGCCUGUGCGACGACAGCc -3' miRNA: 3'- -CGCuGGaag-CGGACGUGCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 23368 | 0.76 | 0.641499 |
Target: 5'- aGCGGCUgcgcaUUCGCCUGCcgcauCGAUAcCAGCg -3' miRNA: 3'- -CGCUGG-----AAGCGGACGu----GCUGUuGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 37216 | 0.77 | 0.617332 |
Target: 5'- cGCGGCCgacgcgcgUGCCcaggcagaggaagGCGCGACGGCGGCg -3' miRNA: 3'- -CGCUGGaa------GCGGa------------CGUGCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 117013 | 0.77 | 0.575247 |
Target: 5'- gGCGAUCccuUUCgcucagacagcuacgGCCUGUugGGCAACAGCg -3' miRNA: 3'- -CGCUGG---AAG---------------CGGACGugCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 38392 | 0.73 | 0.787063 |
Target: 5'- cGCcGCCguccgUCGCCgccgcUGCggugGCGGCAACAGCg -3' miRNA: 3'- -CGcUGGa----AGCGG-----ACG----UGCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 153108 | 0.73 | 0.796011 |
Target: 5'- cGCGGCCcaCGCCcaaGUACGACGAC-GCc -3' miRNA: 3'- -CGCUGGaaGCGGa--CGUGCUGUUGuCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 197059 | 0.72 | 0.854196 |
Target: 5'- cGCGACgg-CGgCgGCAgCGGCAGCAGCg -3' miRNA: 3'- -CGCUGgaaGCgGaCGU-GCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 77328 | 0.72 | 0.854196 |
Target: 5'- uCGACaucUCGCC-GUACGGCAACgAGCa -3' miRNA: 3'- cGCUGga-AGCGGaCGUGCUGUUG-UCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 234922 | 0.72 | 0.854196 |
Target: 5'- gGCGACUagUUGCgUGUgcugcgguggguACGGCGACGGCg -3' miRNA: 3'- -CGCUGGa-AGCGgACG------------UGCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 91 | 0.72 | 0.854196 |
Target: 5'- gGCGACUagUUGCgUGUgcugcgguggguACGGCGACGGCg -3' miRNA: 3'- -CGCUGGa-AGCGgACG------------UGCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 143421 | 0.72 | 0.854196 |
Target: 5'- cGCGGCCU--GCCgcgcGUugGAgAACGGCa -3' miRNA: 3'- -CGCUGGAagCGGa---CGugCUgUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 61913 | 0.72 | 0.838443 |
Target: 5'- uGCGACa----CCaGCACGACGGCGGCg -3' miRNA: 3'- -CGCUGgaagcGGaCGUGCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 919 | 0.72 | 0.838443 |
Target: 5'- uGCGcaGCgCUUCGCUuuucgGgGCGGCGACGGCg -3' miRNA: 3'- -CGC--UG-GAAGCGGa----CgUGCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 101552 | 0.72 | 0.838443 |
Target: 5'- -aGACagaagCGCCgUGCGCGACGggcGCGGCg -3' miRNA: 3'- cgCUGgaa--GCGG-ACGUGCUGU---UGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 192659 | 0.72 | 0.830291 |
Target: 5'- uGCGGCUcgUCGCCgugugGCGCGGCcuggcCGGCu -3' miRNA: 3'- -CGCUGGa-AGCGGa----CGUGCUGuu---GUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 162793 | 0.72 | 0.830291 |
Target: 5'- aGCGGCCgcaugUCGCUgccGCugGACAcgucugaaGCGGUg -3' miRNA: 3'- -CGCUGGa----AGCGGa--CGugCUGU--------UGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 144405 | 0.73 | 0.81347 |
Target: 5'- aGCGGCUgUCuGCCcgGCGCcGCGGCGGCg -3' miRNA: 3'- -CGCUGGaAG-CGGa-CGUGcUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 144117 | 0.73 | 0.81347 |
Target: 5'- cGCGACgaggGUCUGCGCGACAuuuugggucaGCGGCa -3' miRNA: 3'- -CGCUGgaagCGGACGUGCUGU----------UGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 47551 | 0.73 | 0.804816 |
Target: 5'- gGCGAgcucuuuuUCUUCuccaagaaCCUGUACGGCAACGGCg -3' miRNA: 3'- -CGCU--------GGAAGc-------GGACGUGCUGUUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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