Results 61 - 80 of 334 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29975 | 5' | -53.5 | NC_006273.1 | + | 162793 | 0.72 | 0.830291 |
Target: 5'- aGCGGCCgcaugUCGCUgccGCugGACAcgucugaaGCGGUg -3' miRNA: 3'- -CGCUGGa----AGCGGa--CGugCUGU--------UGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 192659 | 0.72 | 0.830291 |
Target: 5'- uGCGGCUcgUCGCCgugugGCGCGGCcuggcCGGCu -3' miRNA: 3'- -CGCUGGa-AGCGGa----CGUGCUGuu---GUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 66152 | 0.71 | 0.874933 |
Target: 5'- aGCGACagCUUCGUCUGCcuGCGACccguagacuuuCAGCg -3' miRNA: 3'- -CGCUG--GAAGCGGACG--UGCUGuu---------GUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 142064 | 0.71 | 0.876352 |
Target: 5'- cGCGGCag-CGCC-GCcaGCGGCGACGGUu -3' miRNA: 3'- -CGCUGgaaGCGGaCG--UGCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 217987 | 0.71 | 0.883322 |
Target: 5'- cGUGGCCggCgGCCauacGCGCGGCAACcGCg -3' miRNA: 3'- -CGCUGGaaG-CGGa---CGUGCUGUUGuCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 58844 | 0.71 | 0.88605 |
Target: 5'- aGUGGCaCgaCGCCauaucgggacucaaGCACGGCGGCAGCa -3' miRNA: 3'- -CGCUG-GaaGCGGa-------------CGUGCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 140045 | 0.71 | 0.890076 |
Target: 5'- uCGGCCgaggUGCCggUGUugGAUAGCAGUa -3' miRNA: 3'- cGCUGGaa--GCGG--ACGugCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 34538 | 0.71 | 0.89661 |
Target: 5'- gGCGGCaagggcaCGCCUcgaaGCGCGGCccaGACAGCg -3' miRNA: 3'- -CGCUGgaa----GCGGA----CGUGCUG---UUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 144857 | 0.71 | 0.89661 |
Target: 5'- cGCGAgUUUCuGCUUucGCACGAC-GCGGCg -3' miRNA: 3'- -CGCUgGAAG-CGGA--CGUGCUGuUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 122201 | 0.71 | 0.897251 |
Target: 5'- gGCGACCgcgcgacuccaugcUGCCUGCGCGuACGGguGUa -3' miRNA: 3'- -CGCUGGaa------------GCGGACGUGC-UGUUguCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 195596 | 0.71 | 0.869171 |
Target: 5'- aCGGCCUUC-CagaUGCACGGCcccaaGGCGGCg -3' miRNA: 3'- cGCUGGAAGcGg--ACGUGCUG-----UUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 204586 | 0.72 | 0.854196 |
Target: 5'- aCGACCgUCGCUggacCACGACAACcggAGCg -3' miRNA: 3'- cGCUGGaAGCGGac--GUGCUGUUG---UCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 101552 | 0.72 | 0.838443 |
Target: 5'- -aGACagaagCGCCgUGCGCGACGggcGCGGCg -3' miRNA: 3'- cgCUGgaa--GCGG-ACGUGCUGU---UGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 919 | 0.72 | 0.838443 |
Target: 5'- uGCGcaGCgCUUCGCUuuucgGgGCGGCGACGGCg -3' miRNA: 3'- -CGC--UG-GAAGCGGa----CgUGCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 61913 | 0.72 | 0.838443 |
Target: 5'- uGCGACa----CCaGCACGACGGCGGCg -3' miRNA: 3'- -CGCUGgaagcGGaCGUGCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 143421 | 0.72 | 0.854196 |
Target: 5'- cGCGGCCU--GCCgcgcGUugGAgAACGGCa -3' miRNA: 3'- -CGCUGGAagCGGa---CGugCUgUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 91 | 0.72 | 0.854196 |
Target: 5'- gGCGACUagUUGCgUGUgcugcgguggguACGGCGACGGCg -3' miRNA: 3'- -CGCUGGa-AGCGgACG------------UGCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 234922 | 0.72 | 0.854196 |
Target: 5'- gGCGACUagUUGCgUGUgcugcgguggguACGGCGACGGCg -3' miRNA: 3'- -CGCUGGa-AGCGgACG------------UGCUGUUGUCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 77328 | 0.72 | 0.854196 |
Target: 5'- uCGACaucUCGCC-GUACGGCAACgAGCa -3' miRNA: 3'- cGCUGga-AGCGGaCGUGCUGUUG-UCG- -5' |
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29975 | 5' | -53.5 | NC_006273.1 | + | 197059 | 0.72 | 0.854196 |
Target: 5'- cGCGACgg-CGgCgGCAgCGGCAGCAGCg -3' miRNA: 3'- -CGCUGgaaGCgGaCGU-GCUGUUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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