miRNA display CGI


Results 81 - 100 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 232883 0.7 0.914288
Target:  5'- uGCGGCUcgcgCGCCcacaGCGCGGCGcgcgggugcagguGCAGCg -3'
miRNA:   3'- -CGCUGGaa--GCGGa---CGUGCUGU-------------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 63918 0.7 0.914864
Target:  5'- aGCG-CCUgcugaguguUCGCgUGCGCGuacgucagauCAGCAGCg -3'
miRNA:   3'- -CGCuGGA---------AGCGgACGUGCu---------GUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 112199 0.7 0.914864
Target:  5'- cGCGugCUUCGgCgguUGCugGAgGacGCGGCg -3'
miRNA:   3'- -CGCugGAAGCgG---ACGugCUgU--UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 137202 0.7 0.914864
Target:  5'- aGCGAgCUcgUCGCCaGCGCGAgCGcuCGGCg -3'
miRNA:   3'- -CGCUgGA--AGCGGaCGUGCU-GUu-GUCG- -5'
29975 5' -53.5 NC_006273.1 + 138163 0.7 0.914864
Target:  5'- gGCGGCCacgGCCUGCG-GGCAggcggguuGCAGCu -3'
miRNA:   3'- -CGCUGGaagCGGACGUgCUGU--------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 117147 0.7 0.92049
Target:  5'- gGCGAgCguuUCGCCUGagGCGGCGugcguuauuaaaGCGGCg -3'
miRNA:   3'- -CGCUgGa--AGCGGACg-UGCUGU------------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 87518 0.7 0.925886
Target:  5'- uCGGagUUUGCCaGCGCGGCGGCGGUc -3'
miRNA:   3'- cGCUggAAGCGGaCGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 122201 0.71 0.897251
Target:  5'- gGCGACCgcgcgacuccaugcUGCCUGCGCGuACGGguGUa -3'
miRNA:   3'- -CGCUGGaa------------GCGGACGUGC-UGUUguCG- -5'
29975 5' -53.5 NC_006273.1 + 144857 0.71 0.89661
Target:  5'- cGCGAgUUUCuGCUUucGCACGAC-GCGGCg -3'
miRNA:   3'- -CGCUgGAAG-CGGA--CGUGCUGuUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 34538 0.71 0.89661
Target:  5'- gGCGGCaagggcaCGCCUcgaaGCGCGGCccaGACAGCg -3'
miRNA:   3'- -CGCUGgaa----GCGGA----CGUGCUG---UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 77328 0.72 0.854196
Target:  5'- uCGACaucUCGCC-GUACGGCAACgAGCa -3'
miRNA:   3'- cGCUGga-AGCGGaCGUGCUGUUG-UCG- -5'
29975 5' -53.5 NC_006273.1 + 197059 0.72 0.854196
Target:  5'- cGCGACgg-CGgCgGCAgCGGCAGCAGCg -3'
miRNA:   3'- -CGCUGgaaGCgGaCGU-GCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 204586 0.72 0.854196
Target:  5'- aCGACCgUCGCUggacCACGACAACcggAGCg -3'
miRNA:   3'- cGCUGGaAGCGGac--GUGCUGUUG---UCG- -5'
29975 5' -53.5 NC_006273.1 + 195596 0.71 0.869171
Target:  5'- aCGGCCUUC-CagaUGCACGGCcccaaGGCGGCg -3'
miRNA:   3'- cGCUGGAAGcGg--ACGUGCUG-----UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 66152 0.71 0.874933
Target:  5'- aGCGACagCUUCGUCUGCcuGCGACccguagacuuuCAGCg -3'
miRNA:   3'- -CGCUG--GAAGCGGACG--UGCUGuu---------GUCG- -5'
29975 5' -53.5 NC_006273.1 + 142064 0.71 0.876352
Target:  5'- cGCGGCag-CGCC-GCcaGCGGCGACGGUu -3'
miRNA:   3'- -CGCUGgaaGCGGaCG--UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 217987 0.71 0.883322
Target:  5'- cGUGGCCggCgGCCauacGCGCGGCAACcGCg -3'
miRNA:   3'- -CGCUGGaaG-CGGa---CGUGCUGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 58844 0.71 0.88605
Target:  5'- aGUGGCaCgaCGCCauaucgggacucaaGCACGGCGGCAGCa -3'
miRNA:   3'- -CGCUG-GaaGCGGa-------------CGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 140045 0.71 0.890076
Target:  5'- uCGGCCgaggUGCCggUGUugGAUAGCAGUa -3'
miRNA:   3'- cGCUGGaa--GCGG--ACGugCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 105365 0.7 0.925886
Target:  5'- aGUGACCgugaugUCGCCgucacccgaGCcCGuGCAACAGCa -3'
miRNA:   3'- -CGCUGGa-----AGCGGa--------CGuGC-UGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.