miRNA display CGI


Results 21 - 40 of 334 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 40029 0.72 0.854196
Target:  5'- gGCGACUagUUGCgUGUgcugcgguggguACGGCGACGGCg -3'
miRNA:   3'- -CGCUGGa-AGCGgACG------------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 104509 0.72 0.838443
Target:  5'- cGCGAUCggCgGCCgggucGCGCGGCAgugACAGCu -3'
miRNA:   3'- -CGCUGGaaG-CGGa----CGUGCUGU---UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 144430 0.76 0.651563
Target:  5'- gGCGACCacggugCGaCUGCACGGCGGCgaGGCg -3'
miRNA:   3'- -CGCUGGaa----GCgGACGUGCUGUUG--UCG- -5'
29975 5' -53.5 NC_006273.1 + 201267 0.79 0.493553
Target:  5'- cGCGGCCUUuugcgagugCGgCgacggGCGCGACGACGGCg -3'
miRNA:   3'- -CGCUGGAA---------GCgGa----CGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 201924 0.71 0.890076
Target:  5'- cGCGAgCUgcugUGCCUGCACGuuuucaAGCuGCg -3'
miRNA:   3'- -CGCUgGAa---GCGGACGUGCug----UUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 145675 0.72 0.861784
Target:  5'- cGCGGCggUCGCaUGCugGGCGcUAGCg -3'
miRNA:   3'- -CGCUGgaAGCGgACGugCUGUuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 40857 0.72 0.838443
Target:  5'- uGCGcaGCgCUUCGCUuuucgGgGCGGCGACGGCg -3'
miRNA:   3'- -CGC--UG-GAAGCGGa----CgUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 18944 0.81 0.390564
Target:  5'- uGCGACCUacUCGCg-GCACGACAagguacccaacaacaGCAGCg -3'
miRNA:   3'- -CGCUGGA--AGCGgaCGUGCUGU---------------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 122992 0.72 0.861784
Target:  5'- gGCGAcgguCCUUCGUcgagcucgcaCUGCugGuuCAACAGCg -3'
miRNA:   3'- -CGCU----GGAAGCG----------GACGugCu-GUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 194876 0.85 0.240919
Target:  5'- aGCGcGCCgggUCGCCUGUcCGGCAGCAGCc -3'
miRNA:   3'- -CGC-UGGa--AGCGGACGuGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 48217 0.72 0.838443
Target:  5'- uCGAUCUacucagCGUCUGCACGA-AACGGCg -3'
miRNA:   3'- cGCUGGAa-----GCGGACGUGCUgUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 2166 0.72 0.854196
Target:  5'- cGCGACgg-CGgCgGCAgCGGCAGCAGCg -3'
miRNA:   3'- -CGCUGgaaGCgGaCGU-GCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 157370 0.74 0.73084
Target:  5'- uGgGGCUgcgUCGCCUGCgACGGCGgguggagaugagGCGGCg -3'
miRNA:   3'- -CgCUGGa--AGCGGACG-UGCUGU------------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 101370 0.76 0.671637
Target:  5'- gGCGGCCgugcgcaUCGCCUGCcucaucCGACAgagcgugcagaGCAGCa -3'
miRNA:   3'- -CGCUGGa------AGCGGACGu-----GCUGU-----------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 154411 0.76 0.641499
Target:  5'- cUGACCUggUgGCCgUGCcCGACGACAGCu -3'
miRNA:   3'- cGCUGGA--AgCGG-ACGuGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 68759 0.79 0.503027
Target:  5'- --aGCUUUCGCCUGCccaccucaugaaGCGGCGGCGGCg -3'
miRNA:   3'- cgcUGGAAGCGGACG------------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 2406 0.71 0.902921
Target:  5'- gGCGcCCgcCGCCgaggccGCGCGGCGGCuGCu -3'
miRNA:   3'- -CGCuGGaaGCGGa-----CGUGCUGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 133740 0.71 0.89661
Target:  5'- cGUGACCUUC-CUa--GCGACGGCGGCc -3'
miRNA:   3'- -CGCUGGAAGcGGacgUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 159899 0.71 0.87422
Target:  5'- gGCGGCCgaagCGCCggcggguccugcguUGCuacugcCGGCGACGGCu -3'
miRNA:   3'- -CGCUGGaa--GCGG--------------ACGu-----GCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 9528 0.71 0.869171
Target:  5'- uGCGACCUUUGUg-GCGCGAUugaGACAccGCa -3'
miRNA:   3'- -CGCUGGAAGCGgaCGUGCUG---UUGU--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.