miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 205988 0.71 0.882635
Target:  5'- cGgGGCCgucuaCGCCUGCgacgugcGCGACGACcGCu -3'
miRNA:   3'- -CgCUGGaa---GCGGACG-------UGCUGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 40857 0.72 0.838443
Target:  5'- uGCGcaGCgCUUCGCUuuucgGgGCGGCGACGGCg -3'
miRNA:   3'- -CGC--UG-GAAGCGGa----CgUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 18944 0.81 0.390564
Target:  5'- uGCGACCUacUCGCg-GCACGACAagguacccaacaacaGCAGCg -3'
miRNA:   3'- -CGCUGGA--AGCGgaCGUGCUGU---------------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 71548 0.71 0.876352
Target:  5'- gGCGGCCgcUGCCgGCgacuuGCGACAACcggAGCa -3'
miRNA:   3'- -CGCUGGaaGCGGaCG-----UGCUGUUG---UCG- -5'
29975 5' -53.5 NC_006273.1 + 194876 0.85 0.240919
Target:  5'- aGCGcGCCgggUCGCCUGUcCGGCAGCAGCc -3'
miRNA:   3'- -CGC-UGGa--AGCGGACGuGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 135770 0.7 0.925886
Target:  5'- aCG-CCgUCGCCUucuCACGGCGGCAGUc -3'
miRNA:   3'- cGCuGGaAGCGGAc--GUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 68759 0.79 0.503027
Target:  5'- --aGCUUUCGCCUGCccaccucaugaaGCGGCGGCGGCg -3'
miRNA:   3'- cgcUGGAAGCGGACG------------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 86520 0.7 0.925886
Target:  5'- --cACCgUCGCCgucgucaCGCGGCAGCGGCg -3'
miRNA:   3'- cgcUGGaAGCGGac-----GUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 45598 0.7 0.925886
Target:  5'- gGCGGCCaUgGCCgcgGCucuACaACAACAGCa -3'
miRNA:   3'- -CGCUGGaAgCGGa--CG---UGcUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 20388 0.7 0.914864
Target:  5'- uGCGACggUCGCUgcCACaGCAGCGGCg -3'
miRNA:   3'- -CGCUGgaAGCGGacGUGcUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 192230 0.7 0.909007
Target:  5'- uGCGGCgaaaaaCGCCUGCAcCGGCGuACGGUg -3'
miRNA:   3'- -CGCUGgaa---GCGGACGU-GCUGU-UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 2406 0.71 0.902921
Target:  5'- gGCGcCCgcCGCCgaggccGCGCGGCGGCuGCu -3'
miRNA:   3'- -CGCuGGaaGCGGa-----CGUGCUGUUGuCG- -5'
29975 5' -53.5 NC_006273.1 + 133740 0.71 0.89661
Target:  5'- cGUGACCUUC-CUa--GCGACGGCGGCc -3'
miRNA:   3'- -CGCUGGAAGcGGacgUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 202557 0.71 0.869171
Target:  5'- cGUGGCCggCGUggcgGC-CGACGGCAGCg -3'
miRNA:   3'- -CGCUGGaaGCGga--CGuGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 122992 0.72 0.861784
Target:  5'- gGCGAcgguCCUUCGUcgagcucgcaCUGCugGuuCAACAGCg -3'
miRNA:   3'- -CGCU----GGAAGCG----------GACGugCu-GUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 40029 0.72 0.854196
Target:  5'- gGCGACUagUUGCgUGUgcugcgguggguACGGCGACGGCg -3'
miRNA:   3'- -CGCUGGa-AGCGgACG------------UGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 104509 0.72 0.838443
Target:  5'- cGCGAUCggCgGCCgggucGCGCGGCAgugACAGCu -3'
miRNA:   3'- -CGCUGGaaG-CGGa----CGUGCUGU---UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 157370 0.74 0.73084
Target:  5'- uGgGGCUgcgUCGCCUGCgACGGCGgguggagaugagGCGGCg -3'
miRNA:   3'- -CgCUGGa--AGCGGACG-UGCUGU------------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 101370 0.76 0.671637
Target:  5'- gGCGGCCgugcgcaUCGCCUGCcucaucCGACAgagcgugcagaGCAGCa -3'
miRNA:   3'- -CGCUGGa------AGCGGACGu-----GCUGU-----------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 154411 0.76 0.641499
Target:  5'- cUGACCUggUgGCCgUGCcCGACGACAGCu -3'
miRNA:   3'- cGCUGGA--AgCGG-ACGuGCUGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.