miRNA display CGI


Results 61 - 80 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29975 5' -53.5 NC_006273.1 + 133740 0.71 0.89661
Target:  5'- cGUGACCUUC-CUa--GCGACGGCGGCc -3'
miRNA:   3'- -CGCUGGAAGcGGacgUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 158230 0.71 0.902921
Target:  5'- cGCGGgCgcgCGUCgGC-CGGCGACGGCg -3'
miRNA:   3'- -CGCUgGaa-GCGGaCGuGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 125086 0.77 0.611296
Target:  5'- aUGGCCUUCGCCUacgcauuaGCACuguucGCAGCAGCc -3'
miRNA:   3'- cGCUGGAAGCGGA--------CGUGc----UGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 150343 0.76 0.641499
Target:  5'- uCGAUCgcgUGCCUGCGCGACGAacuGCa -3'
miRNA:   3'- cGCUGGaa-GCGGACGUGCUGUUgu-CG- -5'
29975 5' -53.5 NC_006273.1 + 93588 0.75 0.681631
Target:  5'- gGCGGCCUgcgCgGCCUGUaccGCGGCuugAGCGGCg -3'
miRNA:   3'- -CGCUGGAa--G-CGGACG---UGCUG---UUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 112321 0.74 0.77798
Target:  5'- aGUGGCgUUUCGCCUGCggcuGCGACGcgaaACGGUg -3'
miRNA:   3'- -CGCUG-GAAGCGGACG----UGCUGU----UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 176268 0.72 0.846414
Target:  5'- aGCGugUUaaugaagCGCUaccgUGCGCGugAGCAGCg -3'
miRNA:   3'- -CGCugGAa------GCGG----ACGUGCugUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 2166 0.72 0.854196
Target:  5'- cGCGACgg-CGgCgGCAgCGGCAGCAGCg -3'
miRNA:   3'- -CGCUGgaaGCgGaCGU-GCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 145675 0.72 0.861784
Target:  5'- cGCGGCggUCGCaUGCugGGCGcUAGCg -3'
miRNA:   3'- -CGCUGgaAGCGgACGugCUGUuGUCG- -5'
29975 5' -53.5 NC_006273.1 + 70918 0.71 0.869171
Target:  5'- cCGGCCUcgggUUGCCUggacgccuggGCGCGAC-GCGGCg -3'
miRNA:   3'- cGCUGGA----AGCGGA----------CGUGCUGuUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 162956 0.68 0.957226
Target:  5'- uGCgGGCaCUggGUCUGCACGACGAgAcGCg -3'
miRNA:   3'- -CG-CUG-GAagCGGACGUGCUGUUgU-CG- -5'
29975 5' -53.5 NC_006273.1 + 133989 0.69 0.953426
Target:  5'- cCGACCcugCGUCcccGCACGACGaccccgcuACAGCa -3'
miRNA:   3'- cGCUGGaa-GCGGa--CGUGCUGU--------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 37990 0.7 0.914288
Target:  5'- uGCGGCUcgcgCGCCcacaGCGCGGCGcgcgggugcagguGCAGCg -3'
miRNA:   3'- -CGCUGGaa--GCGGa---CGUGCUGU-------------UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 43973 0.7 0.914864
Target:  5'- gGCGAUC-UCGC--GCuCGACGACGGCu -3'
miRNA:   3'- -CGCUGGaAGCGgaCGuGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 86520 0.7 0.925886
Target:  5'- --cACCgUCGCCgucgucaCGCGGCAGCGGCg -3'
miRNA:   3'- cgcUGGaAGCGGac-----GUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 135770 0.7 0.925886
Target:  5'- aCG-CCgUCGCCUucuCACGGCGGCAGUc -3'
miRNA:   3'- cGCuGGaAGCGGAc--GUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 144667 0.7 0.93105
Target:  5'- gGCGGCgUUgCGgCaguuugUGCACGACAGuCAGCa -3'
miRNA:   3'- -CGCUGgAA-GCgG------ACGUGCUGUU-GUCG- -5'
29975 5' -53.5 NC_006273.1 + 70132 0.69 0.940685
Target:  5'- cGCGGCUacaGCgaGUGCGGCGAUGGCu -3'
miRNA:   3'- -CGCUGGaagCGgaCGUGCUGUUGUCG- -5'
29975 5' -53.5 NC_006273.1 + 48029 0.69 0.945158
Target:  5'- aGCGuGCCUcCGCCgGaCAUGGCGgugACGGCg -3'
miRNA:   3'- -CGC-UGGAaGCGGaC-GUGCUGU---UGUCG- -5'
29975 5' -53.5 NC_006273.1 + 233561 0.69 0.949404
Target:  5'- -aGGCCgUCGCguugGCGCGcCAACAGUa -3'
miRNA:   3'- cgCUGGaAGCGga--CGUGCuGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.