miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29976 3' -56.3 NC_006273.1 + 1934 0.66 0.947939
Target:  5'- gGCgCGGUgCUGCCCgcgCGGUGgcUGGGu -3'
miRNA:   3'- gUG-GUCAaGACGGGa--GCCACguACCU- -5'
29976 3' -56.3 NC_006273.1 + 196826 0.66 0.947939
Target:  5'- gGCgCGGUgCUGCCCgcgCGGUGgcUGGGu -3'
miRNA:   3'- gUG-GUCAaGACGGGa--GCCACguACCU- -5'
29976 3' -56.3 NC_006273.1 + 211980 0.66 0.92941
Target:  5'- uUAUCcGUUCaGUCCUCGGUGCGUa-- -3'
miRNA:   3'- -GUGGuCAAGaCGGGAGCCACGUAccu -5'
29976 3' -56.3 NC_006273.1 + 43401 0.66 0.9289
Target:  5'- cCACCAGggCUGCuCCUUGGUcuugaccagauagGuCGUGGu -3'
miRNA:   3'- -GUGGUCaaGACG-GGAGCCA-------------C-GUACCu -5'
29976 3' -56.3 NC_006273.1 + 101300 0.67 0.91878
Target:  5'- cCGCCGGU---GCCCcCGaGUGCGUGGc -3'
miRNA:   3'- -GUGGUCAagaCGGGaGC-CACGUACCu -5'
29976 3' -56.3 NC_006273.1 + 202163 0.67 0.91878
Target:  5'- -cCCGGg---GCCCUCGGUGCGcuaccGGGc -3'
miRNA:   3'- guGGUCaagaCGGGAGCCACGUa----CCU- -5'
29976 3' -56.3 NC_006273.1 + 161847 0.67 0.917667
Target:  5'- gCGCCAGUUCgucuuugacaacGCCCgucUGGUcaacuGCGUGGAc -3'
miRNA:   3'- -GUGGUCAAGa-----------CGGGa--GCCA-----CGUACCU- -5'
29976 3' -56.3 NC_006273.1 + 99916 0.67 0.90051
Target:  5'- aUACCAGgcccgUCUugacgcagacggaGCCCUCGa-GCGUGGAg -3'
miRNA:   3'- -GUGGUCa----AGA-------------CGGGAGCcaCGUACCU- -5'
29976 3' -56.3 NC_006273.1 + 214783 0.68 0.867334
Target:  5'- uCGCCAGUUCuUGCgCUUCGGccGCcgGGu -3'
miRNA:   3'- -GUGGUCAAG-ACG-GGAGCCa-CGuaCCu -5'
29976 3' -56.3 NC_006273.1 + 21839 0.68 0.85995
Target:  5'- gCACCucgGGUcugCUGCCCUCG-UGCGaGGAg -3'
miRNA:   3'- -GUGG---UCAa--GACGGGAGCcACGUaCCU- -5'
29976 3' -56.3 NC_006273.1 + 225134 0.78 0.355708
Target:  5'- aACCGGacgCUGCCucagucuCUCGGUGCGUGGAc -3'
miRNA:   3'- gUGGUCaa-GACGG-------GAGCCACGUACCU- -5'
29976 3' -56.3 NC_006273.1 + 10207 1.08 0.004571
Target:  5'- gCACCAGUUCUGCCCUCGGUGCAUGGAc -3'
miRNA:   3'- -GUGGUCAAGACGGGAGCCACGUACCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.