miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29976 5' -57 NC_006273.1 + 6 0.66 0.932814
Target:  5'- uGUCC-CGCACCGgcggcggucGGGGugUGucggGGGCGc -3'
miRNA:   3'- cCAGGuGCGUGGC---------UCUCugAC----UCCGU- -5'
29976 5' -57 NC_006273.1 + 1702 0.66 0.927848
Target:  5'- --gCUGCGCGCCGAgGAGGC-GAcGGCGc -3'
miRNA:   3'- ccaGGUGCGUGGCU-CUCUGaCU-CCGU- -5'
29976 5' -57 NC_006273.1 + 2551 0.7 0.785473
Target:  5'- cGUCCGgGcCGCgGcGAGGCUGAGGUg -3'
miRNA:   3'- cCAGGUgC-GUGgCuCUCUGACUCCGu -5'
29976 5' -57 NC_006273.1 + 10241 1.1 0.003175
Target:  5'- uGGUCCACGCACCGAGAGACUGAGGCAg -3'
miRNA:   3'- -CCAGGUGCGUGGCUCUCUGACUCCGU- -5'
29976 5' -57 NC_006273.1 + 23403 0.69 0.823015
Target:  5'- cGGU-UACGCACCGAG-GACUGAacggauaaccgcaaaGGCc -3'
miRNA:   3'- -CCAgGUGCGUGGCUCuCUGACU---------------CCGu -5'
29976 5' -57 NC_006273.1 + 33225 0.72 0.692067
Target:  5'- cGGUa-GCGCACCGAGGGcCccGGGGCGg -3'
miRNA:   3'- -CCAggUGCGUGGCUCUCuGa-CUCCGU- -5'
29976 5' -57 NC_006273.1 + 33322 0.69 0.827907
Target:  5'- cGUCCGagaGCGCCGAGcuGAaCUGcGGCAg -3'
miRNA:   3'- cCAGGUg--CGUGGCUCu-CU-GACuCCGU- -5'
29976 5' -57 NC_006273.1 + 39148 0.66 0.946391
Target:  5'- -uUUCACGaCGCCGGGAaagccgGGCUGcGGCGg -3'
miRNA:   3'- ccAGGUGC-GUGGCUCU------CUGACuCCGU- -5'
29976 5' -57 NC_006273.1 + 39579 0.75 0.489035
Target:  5'- cGG-CCGCG-ACCGAGGGGCggGGGGCGc -3'
miRNA:   3'- -CCaGGUGCgUGGCUCUCUGa-CUCCGU- -5'
29976 5' -57 NC_006273.1 + 46872 0.7 0.785473
Target:  5'- uGGUCCGgcUGCACCGGGuacgcgacgcGCUGGGGUg -3'
miRNA:   3'- -CCAGGU--GCGUGGCUCuc--------UGACUCCGu -5'
29976 5' -57 NC_006273.1 + 49992 0.68 0.873339
Target:  5'- cGG-CCGCGaCGgCGAGGGA--GAGGCAg -3'
miRNA:   3'- -CCaGGUGC-GUgGCUCUCUgaCUCCGU- -5'
29976 5' -57 NC_006273.1 + 54246 0.66 0.932814
Target:  5'- aGUCCugGC-CCGAaugacgacGAGACagagcccGAGGCGa -3'
miRNA:   3'- cCAGGugCGuGGCU--------CUCUGa------CUCCGU- -5'
29976 5' -57 NC_006273.1 + 56247 0.69 0.83354
Target:  5'- -aUCCGCGCgggacgucGCUGAGGGacgguggcuggucuGCUGGGGCGg -3'
miRNA:   3'- ccAGGUGCG--------UGGCUCUC--------------UGACUCCGU- -5'
29976 5' -57 NC_006273.1 + 59061 0.71 0.73044
Target:  5'- aGGUCCGagaGcCGCCGGGAGAC--AGGCc -3'
miRNA:   3'- -CCAGGUg--C-GUGGCUCUCUGacUCCGu -5'
29976 5' -57 NC_006273.1 + 71602 0.7 0.758422
Target:  5'- gGGUCCcgGCGCGgUGuuAGACaUGGGGCAg -3'
miRNA:   3'- -CCAGG--UGCGUgGCucUCUG-ACUCCGU- -5'
29976 5' -57 NC_006273.1 + 72148 0.69 0.835928
Target:  5'- ---aCGCGgACUGcgaGGAGGCUGAGGCGc -3'
miRNA:   3'- ccagGUGCgUGGC---UCUCUGACUCCGU- -5'
29976 5' -57 NC_006273.1 + 78665 0.66 0.937559
Target:  5'- --aCCGCGCACgCGAGAaggGGCcGGGGUc -3'
miRNA:   3'- ccaGGUGCGUG-GCUCU---CUGaCUCCGu -5'
29976 5' -57 NC_006273.1 + 79051 0.7 0.758422
Target:  5'- gGGcCCACGCGCCaccAGAGcCUGcGGCGu -3'
miRNA:   3'- -CCaGGUGCGUGGc--UCUCuGACuCCGU- -5'
29976 5' -57 NC_006273.1 + 94651 0.7 0.780148
Target:  5'- gGGUCCGCGC-CCuuccccuccccccacGGGGGGCUGGGucGCGg -3'
miRNA:   3'- -CCAGGUGCGuGG---------------CUCUCUGACUC--CGU- -5'
29976 5' -57 NC_006273.1 + 99092 0.71 0.720945
Target:  5'- cGUCUGCGCGCCuGAGAGcCgauuaucGGGGCAg -3'
miRNA:   3'- cCAGGUGCGUGG-CUCUCuGa------CUCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.