miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29976 5' -57 NC_006273.1 + 100182 0.71 0.739857
Target:  5'- cGUUCACGU-CCGGGuGGCUGcAGGCGu -3'
miRNA:   3'- cCAGGUGCGuGGCUCuCUGAC-UCCGU- -5'
29976 5' -57 NC_006273.1 + 101984 0.67 0.913336
Target:  5'- cGG-CCACGCagcaggcGCCGuGGGGCUGAaagaggaggacguggGGCGc -3'
miRNA:   3'- -CCaGGUGCG-------UGGCuCUCUGACU---------------CCGU- -5'
29976 5' -57 NC_006273.1 + 122628 0.66 0.942084
Target:  5'- cGcCCA-GCACCGAGAGcuGCUGuuGCGa -3'
miRNA:   3'- cCaGGUgCGUGGCUCUC--UGACucCGU- -5'
29976 5' -57 NC_006273.1 + 134925 0.66 0.927848
Target:  5'- -aUCCugGacCACCaGGAcGGCUGGGGCGa -3'
miRNA:   3'- ccAGGugC--GUGGcUCU-CUGACUCCGU- -5'
29976 5' -57 NC_006273.1 + 140174 0.69 0.819721
Target:  5'- gGGUCCGagGCGCCGAccccGGCUG-GGCGg -3'
miRNA:   3'- -CCAGGUg-CGUGGCUcu--CUGACuCCGU- -5'
29976 5' -57 NC_006273.1 + 141165 0.67 0.911624
Target:  5'- --gCCGCggacuGCGCCGGGGGGCggcGGGCAc -3'
miRNA:   3'- ccaGGUG-----CGUGGCUCUCUGac-UCCGU- -5'
29976 5' -57 NC_006273.1 + 144167 0.68 0.866236
Target:  5'- --cUCGCGCGCCGAGAucGCcGAGGCc -3'
miRNA:   3'- ccaGGUGCGUGGCUCUc-UGaCUCCGu -5'
29976 5' -57 NC_006273.1 + 147518 0.7 0.758422
Target:  5'- cGGcCCGCuCGCuCGGGAGGCgaugGGGGCGc -3'
miRNA:   3'- -CCaGGUGcGUG-GCUCUCUGa---CUCCGU- -5'
29976 5' -57 NC_006273.1 + 148647 0.7 0.758422
Target:  5'- gGGaUCCugGCGCCG-GAGGCcggccugGAGGUc -3'
miRNA:   3'- -CC-AGGugCGUGGCuCUCUGa------CUCCGu -5'
29976 5' -57 NC_006273.1 + 162966 0.66 0.937559
Target:  5'- gGGUCUgcacgacgagACGCGCgGAgGAGGCUcGAcGGCGg -3'
miRNA:   3'- -CCAGG----------UGCGUGgCU-CUCUGA-CU-CCGU- -5'
29976 5' -57 NC_006273.1 + 164832 0.7 0.794246
Target:  5'- cGGUCCACGUguccuggagcaGuuGAcuGAGAUUGAGGUc -3'
miRNA:   3'- -CCAGGUGCG-----------UggCU--CUCUGACUCCGu -5'
29976 5' -57 NC_006273.1 + 165695 0.66 0.927848
Target:  5'- aGUCUGCgGCACgaUGAGAGugUGAcGGUAa -3'
miRNA:   3'- cCAGGUG-CGUG--GCUCUCugACU-CCGU- -5'
29976 5' -57 NC_006273.1 + 194859 0.68 0.886942
Target:  5'- cGGUCCccgugagcgguaGCGCGCCGGGucGcCUGuccGGCAg -3'
miRNA:   3'- -CCAGG------------UGCGUGGCUCu-CuGACu--CCGU- -5'
29976 5' -57 NC_006273.1 + 194899 0.66 0.932814
Target:  5'- uGUCC-CGCACCGgcggcggucGGGGugUGucggGGGCGc -3'
miRNA:   3'- cCAGGuGCGUGGC---------UCUCugAC----UCCGU- -5'
29976 5' -57 NC_006273.1 + 196595 0.73 0.61359
Target:  5'- --gCUGCGCGCCGAGAGGC-GAcGGCGc -3'
miRNA:   3'- ccaGGUGCGUGGCUCUCUGaCU-CCGU- -5'
29976 5' -57 NC_006273.1 + 208366 0.66 0.927848
Target:  5'- -uUCUACGCGCCGcGAGcuCgucgGAGGCu -3'
miRNA:   3'- ccAGGUGCGUGGCuCUCu-Ga---CUCCGu -5'
29976 5' -57 NC_006273.1 + 219645 0.66 0.929861
Target:  5'- cGUCCACGUggcuucgccagcgucGCCaAGccGAUUGAGGCAa -3'
miRNA:   3'- cCAGGUGCG---------------UGGcUCu-CUGACUCCGU- -5'
29976 5' -57 NC_006273.1 + 225176 0.75 0.489035
Target:  5'- cGUCCAUGCACCGAGGGcagaACUGGuGCu -3'
miRNA:   3'- cCAGGUGCGUGGCUCUC----UGACUcCGu -5'
29976 5' -57 NC_006273.1 + 234472 0.75 0.489035
Target:  5'- cGG-CCGCG-ACCGAGGGGCggGGGGCGc -3'
miRNA:   3'- -CCaGGUGCgUGGCUCUCUGa-CUCCGU- -5'
29976 5' -57 NC_006273.1 + 234837 0.66 0.932814
Target:  5'- uGUCC-CGCACCGgcggcggucGGGGugUGucggGGGCGc -3'
miRNA:   3'- cCAGGuGCGUGGC---------UCUCugAC----UCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.