Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29976 | 5' | -57 | NC_006273.1 | + | 99092 | 0.71 | 0.720945 |
Target: 5'- cGUCUGCGCGCCuGAGAGcCgauuaucGGGGCAg -3' miRNA: 3'- cCAGGUGCGUGG-CUCUCuGa------CUCCGU- -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 94651 | 0.7 | 0.780148 |
Target: 5'- gGGUCCGCGC-CCuuccccuccccccacGGGGGGCUGGGucGCGg -3' miRNA: 3'- -CCAGGUGCGuGG---------------CUCUCUGACUC--CGU- -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 79051 | 0.7 | 0.758422 |
Target: 5'- gGGcCCACGCGCCaccAGAGcCUGcGGCGu -3' miRNA: 3'- -CCaGGUGCGUGGc--UCUCuGACuCCGU- -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 78665 | 0.66 | 0.937559 |
Target: 5'- --aCCGCGCACgCGAGAaggGGCcGGGGUc -3' miRNA: 3'- ccaGGUGCGUG-GCUCU---CUGaCUCCGu -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 72148 | 0.69 | 0.835928 |
Target: 5'- ---aCGCGgACUGcgaGGAGGCUGAGGCGc -3' miRNA: 3'- ccagGUGCgUGGC---UCUCUGACUCCGU- -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 71602 | 0.7 | 0.758422 |
Target: 5'- gGGUCCcgGCGCGgUGuuAGACaUGGGGCAg -3' miRNA: 3'- -CCAGG--UGCGUgGCucUCUG-ACUCCGU- -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 59061 | 0.71 | 0.73044 |
Target: 5'- aGGUCCGagaGcCGCCGGGAGAC--AGGCc -3' miRNA: 3'- -CCAGGUg--C-GUGGCUCUCUGacUCCGu -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 56247 | 0.69 | 0.83354 |
Target: 5'- -aUCCGCGCgggacgucGCUGAGGGacgguggcuggucuGCUGGGGCGg -3' miRNA: 3'- ccAGGUGCG--------UGGCUCUC--------------UGACUCCGU- -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 54246 | 0.66 | 0.932814 |
Target: 5'- aGUCCugGC-CCGAaugacgacGAGACagagcccGAGGCGa -3' miRNA: 3'- cCAGGugCGuGGCU--------CUCUGa------CUCCGU- -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 49992 | 0.68 | 0.873339 |
Target: 5'- cGG-CCGCGaCGgCGAGGGA--GAGGCAg -3' miRNA: 3'- -CCaGGUGC-GUgGCUCUCUgaCUCCGU- -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 46872 | 0.7 | 0.785473 |
Target: 5'- uGGUCCGgcUGCACCGGGuacgcgacgcGCUGGGGUg -3' miRNA: 3'- -CCAGGU--GCGUGGCUCuc--------UGACUCCGu -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 39579 | 0.75 | 0.489035 |
Target: 5'- cGG-CCGCG-ACCGAGGGGCggGGGGCGc -3' miRNA: 3'- -CCaGGUGCgUGGCUCUCUGa-CUCCGU- -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 39148 | 0.66 | 0.946391 |
Target: 5'- -uUUCACGaCGCCGGGAaagccgGGCUGcGGCGg -3' miRNA: 3'- ccAGGUGC-GUGGCUCU------CUGACuCCGU- -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 33322 | 0.69 | 0.827907 |
Target: 5'- cGUCCGagaGCGCCGAGcuGAaCUGcGGCAg -3' miRNA: 3'- cCAGGUg--CGUGGCUCu-CU-GACuCCGU- -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 33225 | 0.72 | 0.692067 |
Target: 5'- cGGUa-GCGCACCGAGGGcCccGGGGCGg -3' miRNA: 3'- -CCAggUGCGUGGCUCUCuGa-CUCCGU- -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 23403 | 0.69 | 0.823015 |
Target: 5'- cGGU-UACGCACCGAG-GACUGAacggauaaccgcaaaGGCc -3' miRNA: 3'- -CCAgGUGCGUGGCUCuCUGACU---------------CCGu -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 10241 | 1.1 | 0.003175 |
Target: 5'- uGGUCCACGCACCGAGAGACUGAGGCAg -3' miRNA: 3'- -CCAGGUGCGUGGCUCUCUGACUCCGU- -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 2551 | 0.7 | 0.785473 |
Target: 5'- cGUCCGgGcCGCgGcGAGGCUGAGGUg -3' miRNA: 3'- cCAGGUgC-GUGgCuCUCUGACUCCGu -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 1702 | 0.66 | 0.927848 |
Target: 5'- --gCUGCGCGCCGAgGAGGC-GAcGGCGc -3' miRNA: 3'- ccaGGUGCGUGGCU-CUCUGaCU-CCGU- -5' |
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29976 | 5' | -57 | NC_006273.1 | + | 6 | 0.66 | 0.932814 |
Target: 5'- uGUCC-CGCACCGgcggcggucGGGGugUGucggGGGCGc -3' miRNA: 3'- cCAGGuGCGUGGC---------UCUCugAC----UCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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