miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29976 5' -57 NC_006273.1 + 225176 0.75 0.489035
Target:  5'- cGUCCAUGCACCGAGGGcagaACUGGuGCu -3'
miRNA:   3'- cCAGGUGCGUGGCUCUC----UGACUcCGu -5'
29976 5' -57 NC_006273.1 + 56247 0.69 0.83354
Target:  5'- -aUCCGCGCgggacgucGCUGAGGGacgguggcuggucuGCUGGGGCGg -3'
miRNA:   3'- ccAGGUGCG--------UGGCUCUC--------------UGACUCCGU- -5'
29976 5' -57 NC_006273.1 + 144167 0.68 0.866236
Target:  5'- --cUCGCGCGCCGAGAucGCcGAGGCc -3'
miRNA:   3'- ccaGGUGCGUGGCUCUc-UGaCUCCGu -5'
29976 5' -57 NC_006273.1 + 101984 0.67 0.913336
Target:  5'- cGG-CCACGCagcaggcGCCGuGGGGCUGAaagaggaggacguggGGCGc -3'
miRNA:   3'- -CCaGGUGCG-------UGGCuCUCUGACU---------------CCGU- -5'
29976 5' -57 NC_006273.1 + 165695 0.66 0.927848
Target:  5'- aGUCUGCgGCACgaUGAGAGugUGAcGGUAa -3'
miRNA:   3'- cCAGGUG-CGUG--GCUCUCugACU-CCGU- -5'
29976 5' -57 NC_006273.1 + 54246 0.66 0.932814
Target:  5'- aGUCCugGC-CCGAaugacgacGAGACagagcccGAGGCGa -3'
miRNA:   3'- cCAGGugCGuGGCU--------CUCUGa------CUCCGU- -5'
29976 5' -57 NC_006273.1 + 194899 0.66 0.932814
Target:  5'- uGUCC-CGCACCGgcggcggucGGGGugUGucggGGGCGc -3'
miRNA:   3'- cCAGGuGCGUGGC---------UCUCugAC----UCCGU- -5'
29976 5' -57 NC_006273.1 + 122628 0.66 0.942084
Target:  5'- cGcCCA-GCACCGAGAGcuGCUGuuGCGa -3'
miRNA:   3'- cCaGGUgCGUGGCUCUC--UGACucCGU- -5'
29976 5' -57 NC_006273.1 + 39148 0.66 0.946391
Target:  5'- -uUUCACGaCGCCGGGAaagccgGGCUGcGGCGg -3'
miRNA:   3'- ccAGGUGC-GUGGCUCU------CUGACuCCGU- -5'
29976 5' -57 NC_006273.1 + 33322 0.69 0.827907
Target:  5'- cGUCCGagaGCGCCGAGcuGAaCUGcGGCAg -3'
miRNA:   3'- cCAGGUg--CGUGGCUCu-CU-GACuCCGU- -5'
29976 5' -57 NC_006273.1 + 23403 0.69 0.823015
Target:  5'- cGGU-UACGCACCGAG-GACUGAacggauaaccgcaaaGGCc -3'
miRNA:   3'- -CCAgGUGCGUGGCUCuCUGACU---------------CCGu -5'
29976 5' -57 NC_006273.1 + 46872 0.7 0.785473
Target:  5'- uGGUCCGgcUGCACCGGGuacgcgacgcGCUGGGGUg -3'
miRNA:   3'- -CCAGGU--GCGUGGCUCuc--------UGACUCCGu -5'
29976 5' -57 NC_006273.1 + 234472 0.75 0.489035
Target:  5'- cGG-CCGCG-ACCGAGGGGCggGGGGCGc -3'
miRNA:   3'- -CCaGGUGCgUGGCUCUCUGa-CUCCGU- -5'
29976 5' -57 NC_006273.1 + 196595 0.73 0.61359
Target:  5'- --gCUGCGCGCCGAGAGGC-GAcGGCGc -3'
miRNA:   3'- ccaGGUGCGUGGCUCUCUGaCU-CCGU- -5'
29976 5' -57 NC_006273.1 + 33225 0.72 0.692067
Target:  5'- cGGUa-GCGCACCGAGGGcCccGGGGCGg -3'
miRNA:   3'- -CCAggUGCGUGGCUCUCuGa-CUCCGU- -5'
29976 5' -57 NC_006273.1 + 59061 0.71 0.73044
Target:  5'- aGGUCCGagaGcCGCCGGGAGAC--AGGCc -3'
miRNA:   3'- -CCAGGUg--C-GUGGCUCUCUGacUCCGu -5'
29976 5' -57 NC_006273.1 + 71602 0.7 0.758422
Target:  5'- gGGUCCcgGCGCGgUGuuAGACaUGGGGCAg -3'
miRNA:   3'- -CCAGG--UGCGUgGCucUCUG-ACUCCGU- -5'
29976 5' -57 NC_006273.1 + 79051 0.7 0.758422
Target:  5'- gGGcCCACGCGCCaccAGAGcCUGcGGCGu -3'
miRNA:   3'- -CCaGGUGCGUGGc--UCUCuGACuCCGU- -5'
29976 5' -57 NC_006273.1 + 147518 0.7 0.758422
Target:  5'- cGGcCCGCuCGCuCGGGAGGCgaugGGGGCGc -3'
miRNA:   3'- -CCaGGUGcGUG-GCUCUCUGa---CUCCGU- -5'
29976 5' -57 NC_006273.1 + 94651 0.7 0.780148
Target:  5'- gGGUCCGCGC-CCuuccccuccccccacGGGGGGCUGGGucGCGg -3'
miRNA:   3'- -CCAGGUGCGuGG---------------CUCUCUGACUC--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.