miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29976 5' -57 NC_006273.1 + 39579 0.75 0.489035
Target:  5'- cGG-CCGCG-ACCGAGGGGCggGGGGCGc -3'
miRNA:   3'- -CCaGGUGCgUGGCUCUCUGa-CUCCGU- -5'
29976 5' -57 NC_006273.1 + 6 0.66 0.932814
Target:  5'- uGUCC-CGCACCGgcggcggucGGGGugUGucggGGGCGc -3'
miRNA:   3'- cCAGGuGCGUGGC---------UCUCugAC----UCCGU- -5'
29976 5' -57 NC_006273.1 + 234837 0.66 0.932814
Target:  5'- uGUCC-CGCACCGgcggcggucGGGGugUGucggGGGCGc -3'
miRNA:   3'- cCAGGuGCGUGGC---------UCUCugAC----UCCGU- -5'
29976 5' -57 NC_006273.1 + 162966 0.66 0.937559
Target:  5'- gGGUCUgcacgacgagACGCGCgGAgGAGGCUcGAcGGCGg -3'
miRNA:   3'- -CCAGG----------UGCGUGgCU-CUCUGA-CU-CCGU- -5'
29976 5' -57 NC_006273.1 + 2551 0.7 0.785473
Target:  5'- cGUCCGgGcCGCgGcGAGGCUGAGGUg -3'
miRNA:   3'- cCAGGUgC-GUGgCuCUCUGACUCCGu -5'
29976 5' -57 NC_006273.1 + 164832 0.7 0.794246
Target:  5'- cGGUCCACGUguccuggagcaGuuGAcuGAGAUUGAGGUc -3'
miRNA:   3'- -CCAGGUGCG-----------UggCU--CUCUGACUCCGu -5'
29976 5' -57 NC_006273.1 + 72148 0.69 0.835928
Target:  5'- ---aCGCGgACUGcgaGGAGGCUGAGGCGc -3'
miRNA:   3'- ccagGUGCgUGGC---UCUCUGACUCCGU- -5'
29976 5' -57 NC_006273.1 + 49992 0.68 0.873339
Target:  5'- cGG-CCGCGaCGgCGAGGGA--GAGGCAg -3'
miRNA:   3'- -CCaGGUGC-GUgGCUCUCUgaCUCCGU- -5'
29976 5' -57 NC_006273.1 + 1702 0.66 0.927848
Target:  5'- --gCUGCGCGCCGAgGAGGC-GAcGGCGc -3'
miRNA:   3'- ccaGGUGCGUGGCU-CUCUGaCU-CCGU- -5'
29976 5' -57 NC_006273.1 + 134925 0.66 0.927848
Target:  5'- -aUCCugGacCACCaGGAcGGCUGGGGCGa -3'
miRNA:   3'- ccAGGugC--GUGGcUCU-CUGACUCCGU- -5'
29976 5' -57 NC_006273.1 + 141165 0.67 0.911624
Target:  5'- --gCCGCggacuGCGCCGGGGGGCggcGGGCAc -3'
miRNA:   3'- ccaGGUG-----CGUGGCUCUCUGac-UCCGU- -5'
29976 5' -57 NC_006273.1 + 99092 0.71 0.720945
Target:  5'- cGUCUGCGCGCCuGAGAGcCgauuaucGGGGCAg -3'
miRNA:   3'- cCAGGUGCGUGG-CUCUCuGa------CUCCGU- -5'
29976 5' -57 NC_006273.1 + 208366 0.66 0.927848
Target:  5'- -uUCUACGCGCCGcGAGcuCgucgGAGGCu -3'
miRNA:   3'- ccAGGUGCGUGGCuCUCu-Ga---CUCCGu -5'
29976 5' -57 NC_006273.1 + 100182 0.71 0.739857
Target:  5'- cGUUCACGU-CCGGGuGGCUGcAGGCGu -3'
miRNA:   3'- cCAGGUGCGuGGCUCuCUGAC-UCCGU- -5'
29976 5' -57 NC_006273.1 + 194859 0.68 0.886942
Target:  5'- cGGUCCccgugagcgguaGCGCGCCGGGucGcCUGuccGGCAg -3'
miRNA:   3'- -CCAGG------------UGCGUGGCUCu-CuGACu--CCGU- -5'
29976 5' -57 NC_006273.1 + 219645 0.66 0.929861
Target:  5'- cGUCCACGUggcuucgccagcgucGCCaAGccGAUUGAGGCAa -3'
miRNA:   3'- cCAGGUGCG---------------UGGcUCu-CUGACUCCGU- -5'
29976 5' -57 NC_006273.1 + 78665 0.66 0.937559
Target:  5'- --aCCGCGCACgCGAGAaggGGCcGGGGUc -3'
miRNA:   3'- ccaGGUGCGUG-GCUCU---CUGaCUCCGu -5'
29976 5' -57 NC_006273.1 + 148647 0.7 0.758422
Target:  5'- gGGaUCCugGCGCCG-GAGGCcggccugGAGGUc -3'
miRNA:   3'- -CC-AGGugCGUGGCuCUCUGa------CUCCGu -5'
29976 5' -57 NC_006273.1 + 140174 0.69 0.819721
Target:  5'- gGGUCCGagGCGCCGAccccGGCUG-GGCGg -3'
miRNA:   3'- -CCAGGUg-CGUGGCUcu--CUGACuCCGU- -5'
29976 5' -57 NC_006273.1 + 10241 1.1 0.003175
Target:  5'- uGGUCCACGCACCGAGAGACUGAGGCAg -3'
miRNA:   3'- -CCAGGUGCGUGGCUCUCUGACUCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.