miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29977 5' -57.3 NC_006273.1 + 50077 0.66 0.929507
Target:  5'- cGU-CGCACGGUggucACCaCCaCGCCgGCCc -3'
miRNA:   3'- -CAuGCGUGCUAa---UGG-GG-GCGGgUGGu -5'
29977 5' -57.3 NC_006273.1 + 80151 0.66 0.929507
Target:  5'- --cCGCGCGAUgGCCCCgGCCUc--- -3'
miRNA:   3'- cauGCGUGCUAaUGGGGgCGGGuggu -5'
29977 5' -57.3 NC_006273.1 + 86677 0.66 0.924378
Target:  5'- -cGCGCAgGGUUccACCUCCaGCUUGCCGg -3'
miRNA:   3'- caUGCGUgCUAA--UGGGGG-CGGGUGGU- -5'
29977 5' -57.3 NC_006273.1 + 24979 0.66 0.924378
Target:  5'- cUACaGCACGGUgggccuUAUCUUCGCCgGCCAc -3'
miRNA:   3'- cAUG-CGUGCUA------AUGGGGGCGGgUGGU- -5'
29977 5' -57.3 NC_006273.1 + 46400 0.66 0.923853
Target:  5'- -cGCGcCGCGuaagaACCUgagcacgCCGCCCACCAa -3'
miRNA:   3'- caUGC-GUGCuaa--UGGG-------GGCGGGUGGU- -5'
29977 5' -57.3 NC_006273.1 + 155937 0.66 0.923325
Target:  5'- -cAUGCGCGAgugucaagaCCCCGUgCGCCGu -3'
miRNA:   3'- caUGCGUGCUaaug-----GGGGCGgGUGGU- -5'
29977 5' -57.3 NC_006273.1 + 227611 0.66 0.919026
Target:  5'- -gGCGCACGcuacuuauggGgaACCCCCggaGCCCGCUc -3'
miRNA:   3'- caUGCGUGC----------UaaUGGGGG---CGGGUGGu -5'
29977 5' -57.3 NC_006273.1 + 45319 0.66 0.918479
Target:  5'- -gGCGCcgACGGUguucgucCCCCCGCcgucggaggagucCCACCAg -3'
miRNA:   3'- caUGCG--UGCUAau-----GGGGGCG-------------GGUGGU- -5'
29977 5' -57.3 NC_006273.1 + 234158 0.66 0.913453
Target:  5'- --cCGCAaGAgu-CCCCCGucCCCGCCAc -3'
miRNA:   3'- cauGCGUgCUaauGGGGGC--GGGUGGU- -5'
29977 5' -57.3 NC_006273.1 + 183746 0.66 0.913453
Target:  5'- -gGCGCAaCGggUGCUgUCCGCgCCGCCGa -3'
miRNA:   3'- caUGCGU-GCuaAUGG-GGGCG-GGUGGU- -5'
29977 5' -57.3 NC_006273.1 + 163676 0.66 0.913453
Target:  5'- cUGCGCGCuGGUUAaacagaCCGCCUGCCAc -3'
miRNA:   3'- cAUGCGUG-CUAAUggg---GGCGGGUGGU- -5'
29977 5' -57.3 NC_006273.1 + 58140 0.66 0.913453
Target:  5'- -cACGCGCagcgGCCUCCGCaCCACg- -3'
miRNA:   3'- caUGCGUGcuaaUGGGGGCG-GGUGgu -5'
29977 5' -57.3 NC_006273.1 + 194220 0.66 0.913453
Target:  5'- --cCGCAaGAgu-CCCCCGucCCCGCCAc -3'
miRNA:   3'- cauGCGUgCUaauGGGGGC--GGGUGGU- -5'
29977 5' -57.3 NC_006273.1 + 81033 0.66 0.913453
Target:  5'- -gACGCGCGA----CCCUGCugCCGCCAg -3'
miRNA:   3'- caUGCGUGCUaaugGGGGCG--GGUGGU- -5'
29977 5' -57.3 NC_006273.1 + 183226 0.66 0.912884
Target:  5'- aGUugGCugGAgcgacacUGCCCCCcguuggaccaggaGCUCAUCAu -3'
miRNA:   3'- -CAugCGugCUa------AUGGGGG-------------CGGGUGGU- -5'
29977 5' -57.3 NC_006273.1 + 221800 0.67 0.907659
Target:  5'- ---aGCACGGcgGCCCgggCCGCCCGgCGg -3'
miRNA:   3'- caugCGUGCUaaUGGG---GGCGGGUgGU- -5'
29977 5' -57.3 NC_006273.1 + 125073 0.67 0.907659
Target:  5'- --cCGCACGGUagaaaugGCCUUCGCCUACgCAu -3'
miRNA:   3'- cauGCGUGCUAa------UGGGGGCGGGUG-GU- -5'
29977 5' -57.3 NC_006273.1 + 39026 0.67 0.907659
Target:  5'- -cGCGCACagacccucggGAUggccgGCCUugUCGCCCACCGu -3'
miRNA:   3'- caUGCGUG----------CUAa----UGGG--GGCGGGUGGU- -5'
29977 5' -57.3 NC_006273.1 + 233919 0.67 0.907659
Target:  5'- -cGCGCACagacccucggGAUggccgGCCUugUCGCCCACCGu -3'
miRNA:   3'- caUGCGUG----------CUAa----UGGG--GGCGGGUGGU- -5'
29977 5' -57.3 NC_006273.1 + 37098 0.67 0.901646
Target:  5'- -cACGCACGA--GCCCUCGaagCGCCGc -3'
miRNA:   3'- caUGCGUGCUaaUGGGGGCgg-GUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.