miRNA display CGI


Results 1 - 20 of 453 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29978 3' -56 NC_006273.1 + 157321 0.66 0.976696
Target:  5'- gGGACGGUGAUGAUGCUgcugagacugagacuGguggugagaguagUgguggggcuGCGUCGCCu -3'
miRNA:   3'- -CCUGCCGCUAUUGCGG---------------U-------------G---------CGCAGCGG- -5'
29978 3' -56 NC_006273.1 + 227112 0.66 0.975992
Target:  5'- -cACGGCGGcGugGgUAUGCGcCGCUg -3'
miRNA:   3'- ccUGCCGCUaUugCgGUGCGCaGCGG- -5'
29978 3' -56 NC_006273.1 + 26327 0.66 0.975992
Target:  5'- cGGACcGCGAU--CGUCAUGCGU-GUCu -3'
miRNA:   3'- -CCUGcCGCUAuuGCGGUGCGCAgCGG- -5'
29978 3' -56 NC_006273.1 + 162806 0.66 0.975992
Target:  5'- -aACGGCa-----GCCGCG-GUCGCCg -3'
miRNA:   3'- ccUGCCGcuauugCGGUGCgCAGCGG- -5'
29978 3' -56 NC_006273.1 + 58054 0.66 0.975992
Target:  5'- uGGAuCGcCGGUGcCGCCugGaacagacacugCGUCGCCu -3'
miRNA:   3'- -CCU-GCcGCUAUuGCGGugC-----------GCAGCGG- -5'
29978 3' -56 NC_006273.1 + 41594 0.66 0.975992
Target:  5'- -cGCGGUGGUGACgggcgGUUugGCGcUCGUCu -3'
miRNA:   3'- ccUGCCGCUAUUG-----CGGugCGC-AGCGG- -5'
29978 3' -56 NC_006273.1 + 29767 0.66 0.975992
Target:  5'- cGACGGCGcgca-GCCcgACGCG-CGCa -3'
miRNA:   3'- cCUGCCGCuauugCGG--UGCGCaGCGg -5'
29978 3' -56 NC_006273.1 + 171040 0.66 0.975992
Target:  5'- uGAuCGGUGucgGGCGUCAUGCGgagUCGCg -3'
miRNA:   3'- cCU-GCCGCua-UUGCGGUGCGC---AGCGg -5'
29978 3' -56 NC_006273.1 + 59609 0.66 0.975992
Target:  5'- -aGCGGCcGUcAACGCCACGgCGaugCGCa -3'
miRNA:   3'- ccUGCCGcUA-UUGCGGUGC-GCa--GCGg -5'
29978 3' -56 NC_006273.1 + 97976 0.66 0.975992
Target:  5'- cGGGCuGCGAgagccAACGUCGCagGCGUcCGCg -3'
miRNA:   3'- -CCUGcCGCUa----UUGCGGUG--CGCA-GCGg -5'
29978 3' -56 NC_006273.1 + 101621 0.66 0.975992
Target:  5'- uGACGGCcgcGUgagugcagcuccAugGCCGC-CGUCGCUa -3'
miRNA:   3'- cCUGCCGc--UA------------UugCGGUGcGCAGCGG- -5'
29978 3' -56 NC_006273.1 + 160924 0.66 0.975992
Target:  5'- cGACGaCGAUAAagaauacaaaGCCGCaGUGUCGUCc -3'
miRNA:   3'- cCUGCcGCUAUUg---------CGGUG-CGCAGCGG- -5'
29978 3' -56 NC_006273.1 + 63752 0.66 0.975992
Target:  5'- cGGucUGGCGc-GugGCCGgGCG-CGCCu -3'
miRNA:   3'- -CCu-GCCGCuaUugCGGUgCGCaGCGG- -5'
29978 3' -56 NC_006273.1 + 120819 0.66 0.975992
Target:  5'- cGACcGCGuagAGCGCCACGCcggcguuuUCGCg -3'
miRNA:   3'- cCUGcCGCua-UUGCGGUGCGc-------AGCGg -5'
29978 3' -56 NC_006273.1 + 92921 0.66 0.975992
Target:  5'- ---aGGUGAUuuguuACGUCACGCGUgugCGCa -3'
miRNA:   3'- ccugCCGCUAu----UGCGGUGCGCA---GCGg -5'
29978 3' -56 NC_006273.1 + 140772 0.66 0.975992
Target:  5'- aGGcCGGguCGAUGACGCCG-GCGacgaggugcauUUGCCu -3'
miRNA:   3'- -CCuGCC--GCUAUUGCGGUgCGC-----------AGCGG- -5'
29978 3' -56 NC_006273.1 + 46387 0.66 0.975272
Target:  5'- cGACGcCGAUAcccGCGCCGCGUaagaaccugagcacGcCGCCc -3'
miRNA:   3'- cCUGCcGCUAU---UGCGGUGCG--------------CaGCGG- -5'
29978 3' -56 NC_006273.1 + 38646 0.66 0.974536
Target:  5'- cGACGcGgGGUGcgGCGCCgACGCGaacggcucguacugCGCCa -3'
miRNA:   3'- cCUGC-CgCUAU--UGCGG-UGCGCa-------------GCGG- -5'
29978 3' -56 NC_006273.1 + 68788 0.66 0.974536
Target:  5'- cGGCGGCGAUGGCGgggcugguugcuuuuCCugGCccugUGCUu -3'
miRNA:   3'- cCUGCCGCUAUUGC---------------GGugCGca--GCGG- -5'
29978 3' -56 NC_006273.1 + 13215 0.66 0.97353
Target:  5'- -uGCGGCGuuacAGCGUCugGUGcggcaugagcucUCGCCu -3'
miRNA:   3'- ccUGCCGCua--UUGCGGugCGC------------AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.