miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29978 5' -58.2 NC_006273.1 + 184466 0.66 0.895416
Target:  5'- gCGGGUGugGCugcgaACGGUagcagUCgCcgGGGAGc -3'
miRNA:   3'- -GCCCACugCG-----UGCCGa----AG-GuaCCCUU- -5'
29978 5' -58.2 NC_006273.1 + 145641 0.66 0.882318
Target:  5'- uGGGgGugGCGgGGaUUCCggGGGAAu -3'
miRNA:   3'- gCCCaCugCGUgCCgAAGGuaCCCUU- -5'
29978 5' -58.2 NC_006273.1 + 156267 0.66 0.875457
Target:  5'- gCGGGUGGagGCGCGGgUcaUCUAcGGGGAc -3'
miRNA:   3'- -GCCCACUg-CGUGCCgA--AGGUaCCCUU- -5'
29978 5' -58.2 NC_006273.1 + 48572 0.67 0.84604
Target:  5'- gGGGUGAgGgGCGGCaugCCGUuggcggcgccGGGAAu -3'
miRNA:   3'- gCCCACUgCgUGCCGaa-GGUA----------CCCUU- -5'
29978 5' -58.2 NC_006273.1 + 113780 0.68 0.804407
Target:  5'- aCGuGGUGugcGCGCACGaGCUgguuugcUCCAUGGaGAAc -3'
miRNA:   3'- -GC-CCAC---UGCGUGC-CGA-------AGGUACC-CUU- -5'
29978 5' -58.2 NC_006273.1 + 196926 0.68 0.79664
Target:  5'- gCGGG-GACGCGCcgugcgcgauGGCaggagCCGUGGGGu -3'
miRNA:   3'- -GCCCaCUGCGUG----------CCGaa---GGUACCCUu -5'
29978 5' -58.2 NC_006273.1 + 2033 0.68 0.79664
Target:  5'- gCGGG-GACGCGCcgugcgcgauGGCaggagCCGUGGGGu -3'
miRNA:   3'- -GCCCaCUGCGUG----------CCGaa---GGUACCCUu -5'
29978 5' -58.2 NC_006273.1 + 82362 0.68 0.778987
Target:  5'- gCGGuUGcUGCACGGCUUUC-UGGGGAc -3'
miRNA:   3'- -GCCcACuGCGUGCCGAAGGuACCCUU- -5'
29978 5' -58.2 NC_006273.1 + 119345 0.7 0.704138
Target:  5'- uCGGGUaGCGgGcCGGCUUCUAUGGaGAc -3'
miRNA:   3'- -GCCCAcUGCgU-GCCGAAGGUACC-CUu -5'
29978 5' -58.2 NC_006273.1 + 152901 0.7 0.684695
Target:  5'- uGGGUGGCGCgguGGCcUCCGUGGucGAAg -3'
miRNA:   3'- gCCCACUGCGug-CCGaAGGUACC--CUU- -5'
29978 5' -58.2 NC_006273.1 + 217247 0.71 0.639464
Target:  5'- uCGGGUgGACGUACGGCUaguacaccgacggcuUCCA-GGGu- -3'
miRNA:   3'- -GCCCA-CUGCGUGCCGA---------------AGGUaCCCuu -5'
29978 5' -58.2 NC_006273.1 + 8122 1.06 0.004573
Target:  5'- gCGGGUGACGCACGGCUUCCAUGGGAAc -3'
miRNA:   3'- -GCCCACUGCGUGCCGAAGGUACCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.