miRNA display CGI


Results 1 - 20 of 144 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 52165 0.66 0.968792
Target:  5'- gCAGUGUC-GCUcCAGCCAACugauCUUGCu -3'
miRNA:   3'- -GUCACGGuUGGaGUCGGUUGc---GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 144577 0.66 0.968792
Target:  5'- -cGUGCCGGCCguaAGCgaGACGCUUu- -3'
miRNA:   3'- guCACGGUUGGag-UCGg-UUGCGAGcg -5'
29979 3' -55.4 NC_006273.1 + 57700 0.66 0.968792
Target:  5'- gCAGcGCCAGCgUCGGCgGcuccgagaggcGCGuCUUGCg -3'
miRNA:   3'- -GUCaCGGUUGgAGUCGgU-----------UGC-GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 87280 0.66 0.968792
Target:  5'- uCGGUGCaCAAauaaCUC-GCgGGcCGCUCGCu -3'
miRNA:   3'- -GUCACG-GUUg---GAGuCGgUU-GCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 35917 0.66 0.968792
Target:  5'- gGGaGCCAACgaCcGCCGugGCgCGCa -3'
miRNA:   3'- gUCaCGGUUGgaGuCGGUugCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 39612 0.66 0.968792
Target:  5'- --aUGCCGuuGCgCUgGGCCAugGC-CGCc -3'
miRNA:   3'- gucACGGU--UG-GAgUCGGUugCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 211432 0.66 0.967594
Target:  5'- gCAG-GUCGGCCUCGGaCC-ACGCgaucucaaacaggCGCg -3'
miRNA:   3'- -GUCaCGGUUGGAGUC-GGuUGCGa------------GCG- -5'
29979 3' -55.4 NC_006273.1 + 51687 0.66 0.965736
Target:  5'- cCGGUgGCCugGAUgUgGGCCAACgaauugGCUCGCa -3'
miRNA:   3'- -GUCA-CGG--UUGgAgUCGGUUG------CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 79812 0.66 0.965736
Target:  5'- ---cGCCAcuacuGCCggAGCCGACGCUgaaaCGCc -3'
miRNA:   3'- gucaCGGU-----UGGagUCGGUUGCGA----GCG- -5'
29979 3' -55.4 NC_006273.1 + 62810 0.66 0.965736
Target:  5'- uGGcGCUGAUC-CAGCCGGCcagucagaagaGCUCGCu -3'
miRNA:   3'- gUCaCGGUUGGaGUCGGUUG-----------CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 231739 0.66 0.965736
Target:  5'- gCAGUGgCCccACCUCGgcauGCCGGCGC-CGg -3'
miRNA:   3'- -GUCAC-GGu-UGGAGU----CGGUUGCGaGCg -5'
29979 3' -55.4 NC_006273.1 + 84596 0.66 0.965736
Target:  5'- -cGUGCgcgaaAGCUUCGGCCGGCuGCU-GCa -3'
miRNA:   3'- guCACGg----UUGGAGUCGGUUG-CGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 154424 0.66 0.965736
Target:  5'- -cGUGcCCGACgaCAGCuCGugGC-CGCg -3'
miRNA:   3'- guCAC-GGUUGgaGUCG-GUugCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 151254 0.66 0.965736
Target:  5'- uCAGUGCUAcaguuCCUaCAGCCG-CGUUauaGCa -3'
miRNA:   3'- -GUCACGGUu----GGA-GUCGGUuGCGAg--CG- -5'
29979 3' -55.4 NC_006273.1 + 87966 0.66 0.965736
Target:  5'- uGGUGCUGACUUUuGUCAACGUcagCGUg -3'
miRNA:   3'- gUCACGGUUGGAGuCGGUUGCGa--GCG- -5'
29979 3' -55.4 NC_006273.1 + 38550 0.66 0.965736
Target:  5'- ---cGCgCAACC-CAGCCAccGCGCggGCa -3'
miRNA:   3'- gucaCG-GUUGGaGUCGGU--UGCGagCG- -5'
29979 3' -55.4 NC_006273.1 + 118203 0.66 0.965736
Target:  5'- ---cGCCcgAACgCUCGGCgGACGC-CGCu -3'
miRNA:   3'- gucaCGG--UUG-GAGUCGgUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 233443 0.66 0.965736
Target:  5'- ---cGCgCAACC-CAGCCAccGCGCggGCa -3'
miRNA:   3'- gucaCG-GUUGGaGUCGGU--UGCGagCG- -5'
29979 3' -55.4 NC_006273.1 + 152889 0.66 0.9651
Target:  5'- -cGUGUaacuuccacuCCUCGGCCAcGCGC-CGCa -3'
miRNA:   3'- guCACGguu-------GGAGUCGGU-UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 119548 0.66 0.962475
Target:  5'- ---cGCCAccACCUCGGCgCGAUGCgUGUa -3'
miRNA:   3'- gucaCGGU--UGGAGUCG-GUUGCGaGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.