miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 62810 0.66 0.965736
Target:  5'- uGGcGCUGAUC-CAGCCGGCcagucagaagaGCUCGCu -3'
miRNA:   3'- gUCaCGGUUGGaGUCGGUUG-----------CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 87280 0.66 0.968792
Target:  5'- uCGGUGCaCAAauaaCUC-GCgGGcCGCUCGCu -3'
miRNA:   3'- -GUCACG-GUUg---GAGuCGgUU-GCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 35917 0.66 0.968792
Target:  5'- gGGaGCCAACgaCcGCCGugGCgCGCa -3'
miRNA:   3'- gUCaCGGUUGgaGuCGGUugCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 232974 0.66 0.962475
Target:  5'- gCAGccGCCGcgcgGCCUCGGCgGcggGCGCcgacUCGCg -3'
miRNA:   3'- -GUCa-CGGU----UGGAGUCGgU---UGCG----AGCG- -5'
29979 3' -55.4 NC_006273.1 + 211432 0.66 0.967594
Target:  5'- gCAG-GUCGGCCUCGGaCC-ACGCgaucucaaacaggCGCg -3'
miRNA:   3'- -GUCaCGGUUGGAGUC-GGuUGCGa------------GCG- -5'
29979 3' -55.4 NC_006273.1 + 216508 0.66 0.962475
Target:  5'- uGGUGCCcagugcGCCgu-GCCAGCGCa-GCa -3'
miRNA:   3'- gUCACGGu-----UGGaguCGGUUGCGagCG- -5'
29979 3' -55.4 NC_006273.1 + 51687 0.66 0.965736
Target:  5'- cCGGUgGCCugGAUgUgGGCCAACgaauugGCUCGCa -3'
miRNA:   3'- -GUCA-CGG--UUGgAgUCGGUUG------CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 52165 0.66 0.968792
Target:  5'- gCAGUGUC-GCUcCAGCCAACugauCUUGCu -3'
miRNA:   3'- -GUCACGGuUGGaGUCGGUUGc---GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 152889 0.66 0.9651
Target:  5'- -cGUGUaacuuccacuCCUCGGCCAcGCGC-CGCa -3'
miRNA:   3'- guCACGguu-------GGAGUCGGU-UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 57700 0.66 0.968792
Target:  5'- gCAGcGCCAGCgUCGGCgGcuccgagaggcGCGuCUUGCg -3'
miRNA:   3'- -GUCaCGGUUGgAGUCGgU-----------UGC-GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 33986 0.66 0.959003
Target:  5'- aGGUGucgauugcgcuCCAGCCUCAGCuCGGCGU--GCu -3'
miRNA:   3'- gUCAC-----------GGUUGGAGUCG-GUUGCGagCG- -5'
29979 3' -55.4 NC_006273.1 + 233443 0.66 0.965736
Target:  5'- ---cGCgCAACC-CAGCCAccGCGCggGCa -3'
miRNA:   3'- gucaCG-GUUGGaGUCGGU--UGCGagCG- -5'
29979 3' -55.4 NC_006273.1 + 48895 0.66 0.951414
Target:  5'- gCAGUGCaCAGguUCUCGGUgAugGCgUCGUa -3'
miRNA:   3'- -GUCACG-GUU--GGAGUCGgUugCG-AGCG- -5'
29979 3' -55.4 NC_006273.1 + 119548 0.66 0.962475
Target:  5'- ---cGCCAccACCUCGGCgCGAUGCgUGUa -3'
miRNA:   3'- gucaCGGU--UGGAGUCG-GUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 52760 0.66 0.955318
Target:  5'- ----cCCGGCCUCGGCCAagaGCGCg-GCc -3'
miRNA:   3'- gucacGGUUGGAGUCGGU---UGCGagCG- -5'
29979 3' -55.4 NC_006273.1 + 134204 0.66 0.962475
Target:  5'- uGGUGUCGguaggcGCCUaCGGCCGccACGCcCGUg -3'
miRNA:   3'- gUCACGGU------UGGA-GUCGGU--UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 155560 0.66 0.959003
Target:  5'- uGGUGCagcgCGGCCUuucgCGGCUggUGCUaCGCg -3'
miRNA:   3'- gUCACG----GUUGGA----GUCGGuuGCGA-GCG- -5'
29979 3' -55.4 NC_006273.1 + 79812 0.66 0.965736
Target:  5'- ---cGCCAcuacuGCCggAGCCGACGCUgaaaCGCc -3'
miRNA:   3'- gucaCGGU-----UGGagUCGGUUGCGA----GCG- -5'
29979 3' -55.4 NC_006273.1 + 153775 0.66 0.955318
Target:  5'- aAG-GCC-GCUUCGGCCucCGC-CGCg -3'
miRNA:   3'- gUCaCGGuUGGAGUCGGuuGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 180438 0.66 0.955318
Target:  5'- ---aGCCAGCaCUuccugacgauugCAGCUuuCGCUCGCu -3'
miRNA:   3'- gucaCGGUUG-GA------------GUCGGuuGCGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.