miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 64814 0.67 0.948965
Target:  5'- aAGUGCCGcGCCgccuggagucgcgguUCGGCCGgaccgugcacGCGCucUCGCg -3'
miRNA:   3'- gUCACGGU-UGG---------------AGUCGGU----------UGCG--AGCG- -5'
29979 3' -55.4 NC_006273.1 + 22446 0.67 0.941588
Target:  5'- aUAGUGCCAGCCcuaUCcuCCAucguacccguguccACGCUgGCu -3'
miRNA:   3'- -GUCACGGUUGG---AGucGGU--------------UGCGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 22265 0.67 0.933553
Target:  5'- -cGUGCCGcuCCaucgCAGCCAcGCGCUgGUg -3'
miRNA:   3'- guCACGGUu-GGa---GUCGGU-UGCGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 46060 0.67 0.942937
Target:  5'- gGGUgGCCAcccACC-C-GCCGACGC-CGCa -3'
miRNA:   3'- gUCA-CGGU---UGGaGuCGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 70443 0.67 0.947288
Target:  5'- -cGUaGCCGACCUgcugaaaGGCCAACGUguauuaguagCGCg -3'
miRNA:   3'- guCA-CGGUUGGAg------UCGGUUGCGa---------GCG- -5'
29979 3' -55.4 NC_006273.1 + 64577 0.67 0.947288
Target:  5'- cCAGcUGCC-ACCagGGCgAcauCGCUCGCu -3'
miRNA:   3'- -GUC-ACGGuUGGagUCGgUu--GCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 46245 0.67 0.947288
Target:  5'- --uUGUCGuCCUCGGCCAGCG-UCGa -3'
miRNA:   3'- gucACGGUuGGAGUCGGUUGCgAGCg -5'
29979 3' -55.4 NC_006273.1 + 183713 0.67 0.947288
Target:  5'- cCAG-GCCAccggGgCUCAGCCuucucACGCUCcgGCg -3'
miRNA:   3'- -GUCaCGGU----UgGAGUCGGu----UGCGAG--CG- -5'
29979 3' -55.4 NC_006273.1 + 167027 0.67 0.947288
Target:  5'- ---cGCCGugCUCAGCUGcucgucGCGUugUCGCa -3'
miRNA:   3'- gucaCGGUugGAGUCGGU------UGCG--AGCG- -5'
29979 3' -55.4 NC_006273.1 + 165960 0.67 0.947288
Target:  5'- gCGGcGCCGccauGCCaggggUCGGCCAuCGuCUCGCa -3'
miRNA:   3'- -GUCaCGGU----UGG-----AGUCGGUuGC-GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 87058 0.67 0.947288
Target:  5'- -cGUGCCAggacgGCCUC-GUCGucGCGCUCcaGCa -3'
miRNA:   3'- guCACGGU-----UGGAGuCGGU--UGCGAG--CG- -5'
29979 3' -55.4 NC_006273.1 + 117112 0.67 0.928516
Target:  5'- ---cGCCGGCCUgAGC--GCGCUCaGCu -3'
miRNA:   3'- gucaCGGUUGGAgUCGguUGCGAG-CG- -5'
29979 3' -55.4 NC_006273.1 + 177022 0.67 0.933553
Target:  5'- uCGGuUGCCGcgGCuCUCcaucGCCAGCGCgCGCu -3'
miRNA:   3'- -GUC-ACGGU--UG-GAGu---CGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 233513 0.67 0.928516
Target:  5'- aGGUGCCGACgCaCGGCCGuagcagcgACGCggggUGCg -3'
miRNA:   3'- gUCACGGUUG-GaGUCGGU--------UGCGa---GCG- -5'
29979 3' -55.4 NC_006273.1 + 234505 0.67 0.933553
Target:  5'- --aUGCCGuuGCgCUgGGCCAugGC-CGCg -3'
miRNA:   3'- gucACGGU--UG-GAgUCGGUugCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 124449 0.67 0.933553
Target:  5'- -cGUGCgCGG-CUC-GCCGACGCUgCGCu -3'
miRNA:   3'- guCACG-GUUgGAGuCGGUUGCGA-GCG- -5'
29979 3' -55.4 NC_006273.1 + 34242 0.67 0.938359
Target:  5'- aCAGggccGCCGGCaggcagCGGCCGAUgaGUUCGCg -3'
miRNA:   3'- -GUCa---CGGUUGga----GUCGGUUG--CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 164267 0.67 0.938359
Target:  5'- aAGUGCC-GCCgUCGGUCGAUcagguaCUCGCa -3'
miRNA:   3'- gUCACGGuUGG-AGUCGGUUGc-----GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 27398 0.67 0.942937
Target:  5'- ---cGCCGacaagACCUCAG-CAugGCUCGg -3'
miRNA:   3'- gucaCGGU-----UGGAGUCgGUugCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 118265 0.67 0.942937
Target:  5'- aGGUGCCAagguagcugagcGCgCUCAgGCCGGCGUggugaaCGCc -3'
miRNA:   3'- gUCACGGU------------UG-GAGU-CGGUUGCGa-----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.