miRNA display CGI


Results 61 - 80 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 118265 0.67 0.942937
Target:  5'- aGGUGCCAagguagcugagcGCgCUCAgGCCGGCGUggugaaCGCc -3'
miRNA:   3'- gUCACGGU------------UG-GAGU-CGGUUGCGa-----GCG- -5'
29979 3' -55.4 NC_006273.1 + 16030 0.67 0.933553
Target:  5'- gAGUGCCAguACagc-GCCGACGUgcuUCGCg -3'
miRNA:   3'- gUCACGGU--UGgaguCGGUUGCG---AGCG- -5'
29979 3' -55.4 NC_006273.1 + 27398 0.67 0.942937
Target:  5'- ---cGCCGacaagACCUCAG-CAugGCUCGg -3'
miRNA:   3'- gucaCGGU-----UGGAGUCgGUugCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 164267 0.67 0.938359
Target:  5'- aAGUGCC-GCCgUCGGUCGAUcagguaCUCGCa -3'
miRNA:   3'- gUCACGGuUGG-AGUCGGUUGc-----GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 34242 0.67 0.938359
Target:  5'- aCAGggccGCCGGCaggcagCGGCCGAUgaGUUCGCg -3'
miRNA:   3'- -GUCa---CGGUUGga----GUCGGUUG--CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 124449 0.67 0.933553
Target:  5'- -cGUGCgCGG-CUC-GCCGACGCUgCGCu -3'
miRNA:   3'- guCACG-GUUgGAGuCGGUUGCGA-GCG- -5'
29979 3' -55.4 NC_006273.1 + 234505 0.67 0.933553
Target:  5'- --aUGCCGuuGCgCUgGGCCAugGC-CGCg -3'
miRNA:   3'- gucACGGU--UG-GAgUCGGUugCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 233513 0.67 0.928516
Target:  5'- aGGUGCCGACgCaCGGCCGuagcagcgACGCggggUGCg -3'
miRNA:   3'- gUCACGGUUG-GaGUCGGU--------UGCGa---GCG- -5'
29979 3' -55.4 NC_006273.1 + 188479 0.67 0.940218
Target:  5'- ---cGCCucgGCCUCGGgagacgcgcgcagccCCAGCGCgUCGCg -3'
miRNA:   3'- gucaCGGu--UGGAGUC---------------GGUUGCG-AGCG- -5'
29979 3' -55.4 NC_006273.1 + 38620 0.68 0.892826
Target:  5'- aGGUGCCGacgcacgGCCgUCAGCagCGACGCggggUGCg -3'
miRNA:   3'- gUCACGGU-------UGG-AGUCG--GUUGCGa---GCG- -5'
29979 3' -55.4 NC_006273.1 + 184417 0.68 0.893479
Target:  5'- cCGGUGUCuAUgUCGGCCGGCgguGCUgGCg -3'
miRNA:   3'- -GUCACGGuUGgAGUCGGUUG---CGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 21884 0.68 0.91775
Target:  5'- -uGUGCguGCCcuucaUCAGCCAGaGCaUCGCg -3'
miRNA:   3'- guCACGguUGG-----AGUCGGUUgCG-AGCG- -5'
29979 3' -55.4 NC_006273.1 + 217863 0.68 0.911437
Target:  5'- aGGUGCCAACguucuuuCUCuGCCAaACGC-CGUu -3'
miRNA:   3'- gUCACGGUUG-------GAGuCGGU-UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 218925 0.68 0.906067
Target:  5'- ---cGCCAACgCaggCGGCCAACGCgUCGg -3'
miRNA:   3'- gucaCGGUUG-Ga--GUCGGUUGCG-AGCg -5'
29979 3' -55.4 NC_006273.1 + 35417 0.68 0.906067
Target:  5'- ---cGUCGGCCUCGGCC-ACGUUC-Ca -3'
miRNA:   3'- gucaCGGUUGGAGUCGGuUGCGAGcG- -5'
29979 3' -55.4 NC_006273.1 + 68282 0.68 0.906067
Target:  5'- gCAG-GCCGACg-CGGCCcggaaAGCGCUCaGCg -3'
miRNA:   3'- -GUCaCGGUUGgaGUCGG-----UUGCGAG-CG- -5'
29979 3' -55.4 NC_006273.1 + 142105 0.68 0.899885
Target:  5'- --cUGCCGcgaaACCUCGGCCAugugguCGUUCGa -3'
miRNA:   3'- gucACGGU----UGGAGUCGGUu-----GCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 156707 0.68 0.899885
Target:  5'- gCGGUGCCcgcgGACCcCGGCCccuucuCGCgugCGCg -3'
miRNA:   3'- -GUCACGG----UUGGaGUCGGuu----GCGa--GCG- -5'
29979 3' -55.4 NC_006273.1 + 147821 0.68 0.899885
Target:  5'- -cGUGCCgAGCCgCGGCUucacACGUUCGUg -3'
miRNA:   3'- guCACGG-UUGGaGUCGGu---UGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 100840 0.68 0.899885
Target:  5'- gGGUGCCAGacguagacUCUCGGCCGuguaGCGCugaaggUCGUa -3'
miRNA:   3'- gUCACGGUU--------GGAGUCGGU----UGCG------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.