miRNA display CGI


Results 81 - 100 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 203878 0.68 0.91775
Target:  5'- gGGuUGCCGGCgUgAGCCAGCGUUacccaacaGCa -3'
miRNA:   3'- gUC-ACGGUUGgAgUCGGUUGCGAg-------CG- -5'
29979 3' -55.4 NC_006273.1 + 217863 0.68 0.911437
Target:  5'- aGGUGCCAACguucuuuCUCuGCCAaACGC-CGUu -3'
miRNA:   3'- gUCACGGUUG-------GAGuCGGU-UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 38620 0.68 0.892826
Target:  5'- aGGUGCCGacgcacgGCCgUCAGCagCGACGCggggUGCg -3'
miRNA:   3'- gUCACGGU-------UGG-AGUCG--GUUGCGa---GCG- -5'
29979 3' -55.4 NC_006273.1 + 120495 0.68 0.899885
Target:  5'- cCGGUGCCGGCCgc-GCUAGCGggCuGCa -3'
miRNA:   3'- -GUCACGGUUGGaguCGGUUGCgaG-CG- -5'
29979 3' -55.4 NC_006273.1 + 117155 0.68 0.906067
Target:  5'- aAGUGCCGuggguguuucuCCUCcGCCAcucgucaGCUCGCu -3'
miRNA:   3'- gUCACGGUu----------GGAGuCGGUug-----CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 72253 0.68 0.91775
Target:  5'- uGGUGCCuccgccGCCUCAGCCGgaGCcCUCc- -3'
miRNA:   3'- gUCACGGu-----UGGAGUCGGU--UGcGAGcg -5'
29979 3' -55.4 NC_006273.1 + 68282 0.68 0.906067
Target:  5'- gCAG-GCCGACg-CGGCCcggaaAGCGCUCaGCg -3'
miRNA:   3'- -GUCaCGGUUGgaGUCGG-----UUGCGAG-CG- -5'
29979 3' -55.4 NC_006273.1 + 35417 0.68 0.906067
Target:  5'- ---cGUCGGCCUCGGCC-ACGUUC-Ca -3'
miRNA:   3'- gucaCGGUUGGAGUCGGuUGCGAGcG- -5'
29979 3' -55.4 NC_006273.1 + 218925 0.68 0.906067
Target:  5'- ---cGCCAACgCaggCGGCCAACGCgUCGg -3'
miRNA:   3'- gucaCGGUUG-Ga--GUCGGUUGCG-AGCg -5'
29979 3' -55.4 NC_006273.1 + 53848 0.68 0.91775
Target:  5'- aCAGUGCCGuga-CAGCCGugGCccUGCa -3'
miRNA:   3'- -GUCACGGUuggaGUCGGUugCGa-GCG- -5'
29979 3' -55.4 NC_006273.1 + 42577 0.69 0.872953
Target:  5'- -cGUGCCGAUCaCGcGCCGcaaguGCGCUUGCu -3'
miRNA:   3'- guCACGGUUGGaGU-CGGU-----UGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 106936 0.69 0.880009
Target:  5'- uCGG-GCCAACCgcauuuGcCCAACGaCUCGCu -3'
miRNA:   3'- -GUCaCGGUUGGagu---C-GGUUGC-GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 213849 0.69 0.872953
Target:  5'- ---cGCCGuCCUCGaaacGCCAGCGCcCGCc -3'
miRNA:   3'- gucaCGGUuGGAGU----CGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 206233 0.69 0.872953
Target:  5'- -cGUGCCAAUUUUuucgcuGCCAACGC-CGUc -3'
miRNA:   3'- guCACGGUUGGAGu-----CGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 92245 0.69 0.872953
Target:  5'- -cGUGCCcgUCUCcugaaagacGGCCAcacaGCGCUCGUu -3'
miRNA:   3'- guCACGGuuGGAG---------UCGGU----UGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 104533 0.69 0.872953
Target:  5'- gCAGUGaCAGCUUguGaCCcGCGCUCGUc -3'
miRNA:   3'- -GUCACgGUUGGAguC-GGuUGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 119420 0.69 0.864211
Target:  5'- ---cGCCcgUCUCAGCCAGCGCcuaugucacccgCGCu -3'
miRNA:   3'- gucaCGGuuGGAGUCGGUUGCGa-----------GCG- -5'
29979 3' -55.4 NC_006273.1 + 4896 0.69 0.858222
Target:  5'- gAGcGCCGACCgacCAGCCGGcCGaUUCGCc -3'
miRNA:   3'- gUCaCGGUUGGa--GUCGGUU-GC-GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 137182 0.69 0.858222
Target:  5'- gGGUGCCGccgcuGCCgcUCAgcgagcucgucGCCAGCGCgagCGCu -3'
miRNA:   3'- gUCACGGU-----UGG--AGU-----------CGGUUGCGa--GCG- -5'
29979 3' -55.4 NC_006273.1 + 61259 0.69 0.872953
Target:  5'- aGGU-CCAGCCacugCAGCgCGGCGCgCGCg -3'
miRNA:   3'- gUCAcGGUUGGa---GUCG-GUUGCGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.