Results 21 - 40 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29979 | 3' | -55.4 | NC_006273.1 | + | 4538 | 0.71 | 0.800804 |
Target: 5'- ----aCCAACCUCAGCCAgacaaGCGCUUuucgGCg -3' miRNA: 3'- gucacGGUUGGAGUCGGU-----UGCGAG----CG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 233649 | 0.71 | 0.800804 |
Target: 5'- -cGUGCCGGCC-CAccGCCGGCGCa-GCu -3' miRNA: 3'- guCACGGUUGGaGU--CGGUUGCGagCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 159301 | 0.71 | 0.804305 |
Target: 5'- cCGGUGCCGGCCcacauauagaaaagCAGCUgcacgaAGCGgUCGCg -3' miRNA: 3'- -GUCACGGUUGGa-------------GUCGG------UUGCgAGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 66762 | 0.7 | 0.842703 |
Target: 5'- uGGUGCgCGACCcgggCAGCCGcgGCUCGg -3' miRNA: 3'- gUCACG-GUUGGa---GUCGGUugCGAGCg -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 102900 | 0.7 | 0.842703 |
Target: 5'- gGGUGCCggUCggggugcgugUAGCCAAagagGCUCGCc -3' miRNA: 3'- gUCACGGuuGGa---------GUCGGUUg---CGAGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 188524 | 0.7 | 0.842703 |
Target: 5'- cCGGUG-CAGCC--GGaCCAGCGCUCGUu -3' miRNA: 3'- -GUCACgGUUGGagUC-GGUUGCGAGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 47306 | 0.7 | 0.842703 |
Target: 5'- gCAGU-CCGGCCUucCAGCCGAUGCU-GUa -3' miRNA: 3'- -GUCAcGGUUGGA--GUCGGUUGCGAgCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 233478 | 0.7 | 0.834664 |
Target: 5'- cCAGcGCCAGCCagccgCAGCacaGACGCUgGUu -3' miRNA: 3'- -GUCaCGGUUGGa----GUCGg--UUGCGAgCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 102990 | 0.7 | 0.842703 |
Target: 5'- -cGUGCCAACC-CGGCgucgGACGCUCc- -3' miRNA: 3'- guCACGGUUGGaGUCGg---UUGCGAGcg -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 73707 | 0.7 | 0.842703 |
Target: 5'- gAGUGCC-GCCgCAGCCGgcagaGCGCcgaaccccgUCGCa -3' miRNA: 3'- gUCACGGuUGGaGUCGGU-----UGCG---------AGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 193882 | 0.7 | 0.842703 |
Target: 5'- --cUGCCAuCCUCAcGCCGACGCcUGUc -3' miRNA: 3'- gucACGGUuGGAGU-CGGUUGCGaGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 38585 | 0.7 | 0.834664 |
Target: 5'- cCAGcGCCAGCCagccgCAGCacaGACGCUgGUu -3' miRNA: 3'- -GUCaCGGUUGGa----GUCGg--UUGCGAgCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 171116 | 0.7 | 0.81806 |
Target: 5'- aGGcGCCAuccGCUUCGGCCGcCGC-CGCa -3' miRNA: 3'- gUCaCGGU---UGGAGUCGGUuGCGaGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 69656 | 0.7 | 0.850558 |
Target: 5'- gAGUGCCAACUUUuggcGCCAACugGCUCc- -3' miRNA: 3'- gUCACGGUUGGAGu---CGGUUG--CGAGcg -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 129546 | 0.69 | 0.886852 |
Target: 5'- ---cGCCGcgccGCCUCGGCUguGACGCUCu- -3' miRNA: 3'- gucaCGGU----UGGAGUCGG--UUGCGAGcg -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 158767 | 0.69 | 0.886852 |
Target: 5'- gAGgccGCCGGCCgCGGCC-ACGgaCGCg -3' miRNA: 3'- gUCa--CGGUUGGaGUCGGuUGCgaGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 137182 | 0.69 | 0.858222 |
Target: 5'- gGGUGCCGccgcuGCCgcUCAgcgagcucgucGCCAGCGCgagCGCu -3' miRNA: 3'- gUCACGGU-----UGG--AGU-----------CGGUUGCGa--GCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 150562 | 0.69 | 0.872953 |
Target: 5'- aCGG-GCCAACCguccaCGGUCuuACGCUCGg -3' miRNA: 3'- -GUCaCGGUUGGa----GUCGGu-UGCGAGCg -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 4896 | 0.69 | 0.858222 |
Target: 5'- gAGcGCCGACCgacCAGCCGGcCGaUUCGCc -3' miRNA: 3'- gUCaCGGUUGGa--GUCGGUU-GC-GAGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 61259 | 0.69 | 0.872953 |
Target: 5'- aGGU-CCAGCCacugCAGCgCGGCGCgCGCg -3' miRNA: 3'- gUCAcGGUUGGa---GUCG-GUUGCGaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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