miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 7015 1.11 0.003641
Target:  5'- aCAGUGCCAACCUCAGCCAACGCUCGCc -3'
miRNA:   3'- -GUCACGGUUGGAGUCGGUUGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 198651 0.76 0.48989
Target:  5'- uCGG-GCCGAgCUguGCCGcCGCUCGCg -3'
miRNA:   3'- -GUCaCGGUUgGAguCGGUuGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 133745 0.76 0.528037
Target:  5'- -cGUGCCGucguGCCuUCGGCCAGCGUgaCGCg -3'
miRNA:   3'- guCACGGU----UGG-AGUCGGUUGCGa-GCG- -5'
29979 3' -55.4 NC_006273.1 + 1668 0.75 0.587117
Target:  5'- ---cGCUgcuGCCUCAGCCGGCGCUC-Cg -3'
miRNA:   3'- gucaCGGu--UGGAGUCGGUUGCGAGcG- -5'
29979 3' -55.4 NC_006273.1 + 196561 0.75 0.587117
Target:  5'- ---cGCUgcuGCCUCAGCCGGCGCUC-Cg -3'
miRNA:   3'- gucaCGGu--UGGAGUCGGUUGCGAGcG- -5'
29979 3' -55.4 NC_006273.1 + 68044 0.74 0.617162
Target:  5'- aGGUGUgGG-CUCGGCCAGCGC-CGCc -3'
miRNA:   3'- gUCACGgUUgGAGUCGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 37011 0.74 0.645295
Target:  5'- gCAGUGCUccagaucGAUCUCAGUCAGCgagugcggcgaauGCUCGCc -3'
miRNA:   3'- -GUCACGG-------UUGGAGUCGGUUG-------------CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 204008 0.74 0.647304
Target:  5'- gCGGUGCCGACCUCGGaCCcAgGgaCGUa -3'
miRNA:   3'- -GUCACGGUUGGAGUC-GGuUgCgaGCG- -5'
29979 3' -55.4 NC_006273.1 + 174105 0.74 0.647304
Target:  5'- -cGUGUacaCGGCCUCGGCCGcgcGCGC-CGCg -3'
miRNA:   3'- guCACG---GUUGGAGUCGGU---UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 116760 0.73 0.67734
Target:  5'- gCAGcuaGCCGGCCUCucgcucuccAGCCGGCGCU-GCg -3'
miRNA:   3'- -GUCa--CGGUUGGAG---------UCGGUUGCGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 230494 0.73 0.687292
Target:  5'- ---gGCCGGCUggUCGGUCGGCGCUCGg -3'
miRNA:   3'- gucaCGGUUGG--AGUCGGUUGCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 140882 0.72 0.716848
Target:  5'- aGGUGCCcGCCU-GGCCGGC-CUCGUc -3'
miRNA:   3'- gUCACGGuUGGAgUCGGUUGcGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 161643 0.72 0.726572
Target:  5'- --cUGCCgGGCCUCGGCCGcCGC-CGCc -3'
miRNA:   3'- gucACGG-UUGGAGUCGGUuGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 118240 0.72 0.726572
Target:  5'- ---cGCC-GCCUCAGgCGaaACGCUCGCc -3'
miRNA:   3'- gucaCGGuUGGAGUCgGU--UGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 87851 0.72 0.736217
Target:  5'- ---cGCCAGCCUCGucuucGCCGGCGUUCa- -3'
miRNA:   3'- gucaCGGUUGGAGU-----CGGUUGCGAGcg -5'
29979 3' -55.4 NC_006273.1 + 175949 0.72 0.758994
Target:  5'- -cGUGCCGcaguacgacuuucugAUCUCGGCCGACccuuuCUCGCg -3'
miRNA:   3'- guCACGGU---------------UGGAGUCGGUUGc----GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 45585 0.71 0.764595
Target:  5'- aAGcUGCCGugCaggCGGCCAugGC-CGCg -3'
miRNA:   3'- gUC-ACGGUugGa--GUCGGUugCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 160125 0.71 0.782961
Target:  5'- gAGgcgGCC-GCCgcggCGGCCAGCGCUuCGUc -3'
miRNA:   3'- gUCa--CGGuUGGa---GUCGGUUGCGA-GCG- -5'
29979 3' -55.4 NC_006273.1 + 68199 0.71 0.782961
Target:  5'- ---cGCCGGCCUCcgcGGCCGcuGCGCcCGCc -3'
miRNA:   3'- gucaCGGUUGGAG---UCGGU--UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 233649 0.71 0.800804
Target:  5'- -cGUGCCGGCC-CAccGCCGGCGCa-GCu -3'
miRNA:   3'- guCACGGUUGGaGU--CGGUUGCGagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.