miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 61259 0.69 0.872953
Target:  5'- aGGU-CCAGCCacugCAGCgCGGCGCgCGCg -3'
miRNA:   3'- gUCAcGGUUGGa---GUCG-GUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 42577 0.69 0.872953
Target:  5'- -cGUGCCGAUCaCGcGCCGcaaguGCGCUUGCu -3'
miRNA:   3'- guCACGGUUGGaGU-CGGU-----UGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 147912 0.69 0.872953
Target:  5'- ---cGCUGGCCUCGGCCGugacuACGgaCGCc -3'
miRNA:   3'- gucaCGGUUGGAGUCGGU-----UGCgaGCG- -5'
29979 3' -55.4 NC_006273.1 + 92245 0.69 0.872953
Target:  5'- -cGUGCCcgUCUCcugaaagacGGCCAcacaGCGCUCGUu -3'
miRNA:   3'- guCACGGuuGGAG---------UCGGU----UGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 150562 0.69 0.872953
Target:  5'- aCGG-GCCAACCguccaCGGUCuuACGCUCGg -3'
miRNA:   3'- -GUCaCGGUUGGa----GUCGGu-UGCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 213849 0.69 0.872953
Target:  5'- ---cGCCGuCCUCGaaacGCCAGCGCcCGCc -3'
miRNA:   3'- gucaCGGUuGGAGU----CGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 206233 0.69 0.872953
Target:  5'- -cGUGCCAAUUUUuucgcuGCCAACGC-CGUc -3'
miRNA:   3'- guCACGGUUGGAGu-----CGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 104533 0.69 0.872953
Target:  5'- gCAGUGaCAGCUUguGaCCcGCGCUCGUc -3'
miRNA:   3'- -GUCACgGUUGGAguC-GGuUGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 106936 0.69 0.880009
Target:  5'- uCGG-GCCAACCgcauuuGcCCAACGaCUCGCu -3'
miRNA:   3'- -GUCaCGGUUGGagu---C-GGUUGC-GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 45251 0.69 0.880009
Target:  5'- -cGUGCC-GCC-CGGCgGcUGCUCGCg -3'
miRNA:   3'- guCACGGuUGGaGUCGgUuGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 232827 0.69 0.880009
Target:  5'- gGGUGagcACCUCAGCCu-CGC-CGCg -3'
miRNA:   3'- gUCACgguUGGAGUCGGuuGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 171473 0.69 0.886852
Target:  5'- ---cGCgAACaCUCAGCaGGCGCUCGUu -3'
miRNA:   3'- gucaCGgUUG-GAGUCGgUUGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 129546 0.69 0.886852
Target:  5'- ---cGCCGcgccGCCUCGGCUguGACGCUCu- -3'
miRNA:   3'- gucaCGGU----UGGAGUCGG--UUGCGAGcg -5'
29979 3' -55.4 NC_006273.1 + 158767 0.69 0.886852
Target:  5'- gAGgccGCCGGCCgCGGCC-ACGgaCGCg -3'
miRNA:   3'- gUCa--CGGUUGGaGUCGGuUGCgaGCG- -5'
29979 3' -55.4 NC_006273.1 + 38620 0.68 0.892826
Target:  5'- aGGUGCCGacgcacgGCCgUCAGCagCGACGCggggUGCg -3'
miRNA:   3'- gUCACGGU-------UGG-AGUCG--GUUGCGa---GCG- -5'
29979 3' -55.4 NC_006273.1 + 31910 0.68 0.893479
Target:  5'- uGGUGCCAGCCUCGGuaCCAuauACGUauuUCa- -3'
miRNA:   3'- gUCACGGUUGGAGUC--GGU---UGCG---AGcg -5'
29979 3' -55.4 NC_006273.1 + 184417 0.68 0.893479
Target:  5'- cCGGUGUCuAUgUCGGCCGGCgguGCUgGCg -3'
miRNA:   3'- -GUCACGGuUGgAGUCGGUUG---CGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 142105 0.68 0.899885
Target:  5'- --cUGCCGcgaaACCUCGGCCAugugguCGUUCGa -3'
miRNA:   3'- gucACGGU----UGGAGUCGGUu-----GCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 156707 0.68 0.899885
Target:  5'- gCGGUGCCcgcgGACCcCGGCCccuucuCGCgugCGCg -3'
miRNA:   3'- -GUCACGG----UUGGaGUCGGuu----GCGa--GCG- -5'
29979 3' -55.4 NC_006273.1 + 100840 0.68 0.899885
Target:  5'- gGGUGCCAGacguagacUCUCGGCCGuguaGCGCugaaggUCGUa -3'
miRNA:   3'- gUCACGGUU--------GGAGUCGGU----UGCG------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.