miRNA display CGI


Results 61 - 80 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 156707 0.68 0.899885
Target:  5'- gCGGUGCCcgcgGACCcCGGCCccuucuCGCgugCGCg -3'
miRNA:   3'- -GUCACGG----UUGGaGUCGGuu----GCGa--GCG- -5'
29979 3' -55.4 NC_006273.1 + 120495 0.68 0.899885
Target:  5'- cCGGUGCCGGCCgc-GCUAGCGggCuGCa -3'
miRNA:   3'- -GUCACGGUUGGaguCGGUUGCgaG-CG- -5'
29979 3' -55.4 NC_006273.1 + 117155 0.68 0.906067
Target:  5'- aAGUGCCGuggguguuucuCCUCcGCCAcucgucaGCUCGCu -3'
miRNA:   3'- gUCACGGUu----------GGAGuCGGUug-----CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 68282 0.68 0.906067
Target:  5'- gCAG-GCCGACg-CGGCCcggaaAGCGCUCaGCg -3'
miRNA:   3'- -GUCaCGGUUGgaGUCGG-----UUGCGAG-CG- -5'
29979 3' -55.4 NC_006273.1 + 35417 0.68 0.906067
Target:  5'- ---cGUCGGCCUCGGCC-ACGUUC-Ca -3'
miRNA:   3'- gucaCGGUUGGAGUCGGuUGCGAGcG- -5'
29979 3' -55.4 NC_006273.1 + 218925 0.68 0.906067
Target:  5'- ---cGCCAACgCaggCGGCCAACGCgUCGg -3'
miRNA:   3'- gucaCGGUUG-Ga--GUCGGUUGCG-AGCg -5'
29979 3' -55.4 NC_006273.1 + 111276 0.68 0.906067
Target:  5'- ---cGCCGAgCUCuGUCGACGC-CGCc -3'
miRNA:   3'- gucaCGGUUgGAGuCGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 130408 0.68 0.906067
Target:  5'- cCAGacUGUCGGCCUCGGaCAugGCaaacUCGCc -3'
miRNA:   3'- -GUC--ACGGUUGGAGUCgGUugCG----AGCG- -5'
29979 3' -55.4 NC_006273.1 + 217863 0.68 0.911437
Target:  5'- aGGUGCCAACguucuuuCUCuGCCAaACGC-CGUu -3'
miRNA:   3'- gUCACGGUUG-------GAGuCGGU-UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 203878 0.68 0.91775
Target:  5'- gGGuUGCCGGCgUgAGCCAGCGUUacccaacaGCa -3'
miRNA:   3'- gUC-ACGGUUGgAgUCGGUUGCGAg-------CG- -5'
29979 3' -55.4 NC_006273.1 + 53848 0.68 0.91775
Target:  5'- aCAGUGCCGuga-CAGCCGugGCccUGCa -3'
miRNA:   3'- -GUCACGGUuggaGUCGGUugCGa-GCG- -5'
29979 3' -55.4 NC_006273.1 + 72253 0.68 0.91775
Target:  5'- uGGUGCCuccgccGCCUCAGCCGgaGCcCUCc- -3'
miRNA:   3'- gUCACGGu-----UGGAGUCGGU--UGcGAGcg -5'
29979 3' -55.4 NC_006273.1 + 21884 0.68 0.91775
Target:  5'- -uGUGCguGCCcuucaUCAGCCAGaGCaUCGCg -3'
miRNA:   3'- guCACGguUGG-----AGUCGGUUgCG-AGCG- -5'
29979 3' -55.4 NC_006273.1 + 30105 0.68 0.922709
Target:  5'- cCAG-GCCGAaCUCGGCCGugaGCGCcaggcuagccagaUCGCu -3'
miRNA:   3'- -GUCaCGGUUgGAGUCGGU---UGCG-------------AGCG- -5'
29979 3' -55.4 NC_006273.1 + 197666 0.68 0.923248
Target:  5'- uCAGUGCUcaggcaAGCgUCAGCUAuGCGCUC-Cg -3'
miRNA:   3'- -GUCACGG------UUGgAGUCGGU-UGCGAGcG- -5'
29979 3' -55.4 NC_006273.1 + 233513 0.67 0.928516
Target:  5'- aGGUGCCGACgCaCGGCCGuagcagcgACGCggggUGCg -3'
miRNA:   3'- gUCACGGUUG-GaGUCGGU--------UGCGa---GCG- -5'
29979 3' -55.4 NC_006273.1 + 227580 0.67 0.928516
Target:  5'- uCGGUGacaCAGCUUCAGaaaCAACGUguguggCGCa -3'
miRNA:   3'- -GUCACg--GUUGGAGUCg--GUUGCGa-----GCG- -5'
29979 3' -55.4 NC_006273.1 + 28572 0.67 0.928516
Target:  5'- -uGUGCaugCAGCC--GGCCAGCGCUCuaaGCg -3'
miRNA:   3'- guCACG---GUUGGagUCGGUUGCGAG---CG- -5'
29979 3' -55.4 NC_006273.1 + 87170 0.67 0.928516
Target:  5'- gGGUGCCAuacuCUUCAGa-GACGCguucCGCg -3'
miRNA:   3'- gUCACGGUu---GGAGUCggUUGCGa---GCG- -5'
29979 3' -55.4 NC_006273.1 + 140721 0.67 0.928516
Target:  5'- uGGUGgCGGCggCggGGCCGGCGCUUGUg -3'
miRNA:   3'- gUCACgGUUGgaG--UCGGUUGCGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.