miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 216508 0.66 0.962475
Target:  5'- uGGUGCCcagugcGCCgu-GCCAGCGCa-GCa -3'
miRNA:   3'- gUCACGGu-----UGGaguCGGUUGCGagCG- -5'
29979 3' -55.4 NC_006273.1 + 11771 0.66 0.962475
Target:  5'- gAGcUGCCAACCgCAGCCcACGaaCGa -3'
miRNA:   3'- gUC-ACGGUUGGaGUCGGuUGCgaGCg -5'
29979 3' -55.4 NC_006273.1 + 38081 0.66 0.962475
Target:  5'- gCAGccGCCGcgcgGCCUCGGCgGcggGCGCcgacUCGCg -3'
miRNA:   3'- -GUCa-CGGU----UGGAGUCGgU---UGCG----AGCG- -5'
29979 3' -55.4 NC_006273.1 + 232974 0.66 0.962475
Target:  5'- gCAGccGCCGcgcgGCCUCGGCgGcggGCGCcgacUCGCg -3'
miRNA:   3'- -GUCa-CGGU----UGGAGUCGgU---UGCG----AGCG- -5'
29979 3' -55.4 NC_006273.1 + 134204 0.66 0.962475
Target:  5'- uGGUGUCGguaggcGCCUaCGGCCGccACGCcCGUg -3'
miRNA:   3'- gUCACGGU------UGGA-GUCGGU--UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 33986 0.66 0.959003
Target:  5'- aGGUGucgauugcgcuCCAGCCUCAGCuCGGCGU--GCu -3'
miRNA:   3'- gUCAC-----------GGUUGGAGUCG-GUUGCGagCG- -5'
29979 3' -55.4 NC_006273.1 + 155560 0.66 0.959003
Target:  5'- uGGUGCagcgCGGCCUuucgCGGCUggUGCUaCGCg -3'
miRNA:   3'- gUCACG----GUUGGA----GUCGGuuGCGA-GCG- -5'
29979 3' -55.4 NC_006273.1 + 85697 0.66 0.955318
Target:  5'- cCAGUcGCCAccgGCCgcgcagcaaCAGCCAccuaACGC-CGCg -3'
miRNA:   3'- -GUCA-CGGU---UGGa--------GUCGGU----UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 167969 0.66 0.955318
Target:  5'- --uUGCCGGCCUCuucuuGCCAuucACGUUCcaGCc -3'
miRNA:   3'- gucACGGUUGGAGu----CGGU---UGCGAG--CG- -5'
29979 3' -55.4 NC_006273.1 + 52760 0.66 0.955318
Target:  5'- ----cCCGGCCUCGGCCAagaGCGCg-GCc -3'
miRNA:   3'- gucacGGUUGGAGUCGGU---UGCGagCG- -5'
29979 3' -55.4 NC_006273.1 + 153775 0.66 0.955318
Target:  5'- aAG-GCC-GCUUCGGCCucCGC-CGCg -3'
miRNA:   3'- gUCaCGGuUGGAGUCGGuuGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 180438 0.66 0.955318
Target:  5'- ---aGCCAGCaCUuccugacgauugCAGCUuuCGCUCGCu -3'
miRNA:   3'- gucaCGGUUG-GA------------GUCGGuuGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 89993 0.66 0.951814
Target:  5'- ---cGCCGGCCagcaacucgCAGCCcaguucgcuuuccucGCGCUCGCg -3'
miRNA:   3'- gucaCGGUUGGa--------GUCGGu--------------UGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 117061 0.66 0.951414
Target:  5'- --uUGCC-GCCUCAGaacCCGACGCgguaGCg -3'
miRNA:   3'- gucACGGuUGGAGUC---GGUUGCGag--CG- -5'
29979 3' -55.4 NC_006273.1 + 153608 0.66 0.951414
Target:  5'- gCGGUGCgGucgcgggugGCCggcGUCAGCGUUCGCa -3'
miRNA:   3'- -GUCACGgU---------UGGaguCGGUUGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 162038 0.66 0.951414
Target:  5'- uGGUGCUGGCUcuUCuGCUggUGCUgGCu -3'
miRNA:   3'- gUCACGGUUGG--AGuCGGuuGCGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 48895 0.66 0.951414
Target:  5'- gCAGUGCaCAGguUCUCGGUgAugGCgUCGUa -3'
miRNA:   3'- -GUCACG-GUU--GGAGUCGgUugCG-AGCG- -5'
29979 3' -55.4 NC_006273.1 + 84075 0.66 0.951012
Target:  5'- gAGUGCCAgaaaggggaacuGCCUCgagcggcGGCCcaggAACGCUUGa -3'
miRNA:   3'- gUCACGGU------------UGGAG-------UCGG----UUGCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 179182 0.66 0.9502
Target:  5'- gCAGcGCCAGCCUUAGCUuucuugacuggccgGACGacaGCg -3'
miRNA:   3'- -GUCaCGGUUGGAGUCGG--------------UUGCgagCG- -5'
29979 3' -55.4 NC_006273.1 + 64814 0.67 0.948965
Target:  5'- aAGUGCCGcGCCgccuggagucgcgguUCGGCCGgaccgugcacGCGCucUCGCg -3'
miRNA:   3'- gUCACGGU-UGG---------------AGUCGGU----------UGCG--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.