miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 1668 0.75 0.587117
Target:  5'- ---cGCUgcuGCCUCAGCCGGCGCUC-Cg -3'
miRNA:   3'- gucaCGGu--UGGAGUCGGUUGCGAGcG- -5'
29979 3' -55.4 NC_006273.1 + 4538 0.71 0.800804
Target:  5'- ----aCCAACCUCAGCCAgacaaGCGCUUuucgGCg -3'
miRNA:   3'- gucacGGUUGGAGUCGGU-----UGCGAG----CG- -5'
29979 3' -55.4 NC_006273.1 + 4896 0.69 0.858222
Target:  5'- gAGcGCCGACCgacCAGCCGGcCGaUUCGCc -3'
miRNA:   3'- gUCaCGGUUGGa--GUCGGUU-GC-GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 7015 1.11 0.003641
Target:  5'- aCAGUGCCAACCUCAGCCAACGCUCGCc -3'
miRNA:   3'- -GUCACGGUUGGAGUCGGUUGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 11771 0.66 0.962475
Target:  5'- gAGcUGCCAACCgCAGCCcACGaaCGa -3'
miRNA:   3'- gUC-ACGGUUGGaGUCGGuUGCgaGCg -5'
29979 3' -55.4 NC_006273.1 + 16030 0.67 0.933553
Target:  5'- gAGUGCCAguACagc-GCCGACGUgcuUCGCg -3'
miRNA:   3'- gUCACGGU--UGgaguCGGUUGCG---AGCG- -5'
29979 3' -55.4 NC_006273.1 + 21884 0.68 0.91775
Target:  5'- -uGUGCguGCCcuucaUCAGCCAGaGCaUCGCg -3'
miRNA:   3'- guCACGguUGG-----AGUCGGUUgCG-AGCG- -5'
29979 3' -55.4 NC_006273.1 + 22265 0.67 0.933553
Target:  5'- -cGUGCCGcuCCaucgCAGCCAcGCGCUgGUg -3'
miRNA:   3'- guCACGGUu-GGa---GUCGGU-UGCGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 22446 0.67 0.941588
Target:  5'- aUAGUGCCAGCCcuaUCcuCCAucguacccguguccACGCUgGCu -3'
miRNA:   3'- -GUCACGGUUGG---AGucGGU--------------UGCGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 27398 0.67 0.942937
Target:  5'- ---cGCCGacaagACCUCAG-CAugGCUCGg -3'
miRNA:   3'- gucaCGGU-----UGGAGUCgGUugCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 28572 0.67 0.928516
Target:  5'- -uGUGCaugCAGCC--GGCCAGCGCUCuaaGCg -3'
miRNA:   3'- guCACG---GUUGGagUCGGUUGCGAG---CG- -5'
29979 3' -55.4 NC_006273.1 + 30105 0.68 0.922709
Target:  5'- cCAG-GCCGAaCUCGGCCGugaGCGCcaggcuagccagaUCGCu -3'
miRNA:   3'- -GUCaCGGUUgGAGUCGGU---UGCG-------------AGCG- -5'
29979 3' -55.4 NC_006273.1 + 31910 0.68 0.893479
Target:  5'- uGGUGCCAGCCUCGGuaCCAuauACGUauuUCa- -3'
miRNA:   3'- gUCACGGUUGGAGUC--GGU---UGCG---AGcg -5'
29979 3' -55.4 NC_006273.1 + 33986 0.66 0.959003
Target:  5'- aGGUGucgauugcgcuCCAGCCUCAGCuCGGCGU--GCu -3'
miRNA:   3'- gUCAC-----------GGUUGGAGUCG-GUUGCGagCG- -5'
29979 3' -55.4 NC_006273.1 + 34242 0.67 0.938359
Target:  5'- aCAGggccGCCGGCaggcagCGGCCGAUgaGUUCGCg -3'
miRNA:   3'- -GUCa---CGGUUGga----GUCGGUUG--CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 35417 0.68 0.906067
Target:  5'- ---cGUCGGCCUCGGCC-ACGUUC-Ca -3'
miRNA:   3'- gucaCGGUUGGAGUCGGuUGCGAGcG- -5'
29979 3' -55.4 NC_006273.1 + 35917 0.66 0.968792
Target:  5'- gGGaGCCAACgaCcGCCGugGCgCGCa -3'
miRNA:   3'- gUCaCGGUUGgaGuCGGUugCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 37011 0.74 0.645295
Target:  5'- gCAGUGCUccagaucGAUCUCAGUCAGCgagugcggcgaauGCUCGCc -3'
miRNA:   3'- -GUCACGG-------UUGGAGUCGGUUG-------------CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 37179 0.67 0.947288
Target:  5'- -cGUGCaaaaGACCUCGGguaCCAagcaGCGUUUGCg -3'
miRNA:   3'- guCACGg---UUGGAGUC---GGU----UGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 38081 0.66 0.962475
Target:  5'- gCAGccGCCGcgcgGCCUCGGCgGcggGCGCcgacUCGCg -3'
miRNA:   3'- -GUCa-CGGU----UGGAGUCGgU---UGCG----AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.