miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 64814 0.67 0.948965
Target:  5'- aAGUGCCGcGCCgccuggagucgcgguUCGGCCGgaccgugcacGCGCucUCGCg -3'
miRNA:   3'- gUCACGGU-UGG---------------AGUCGGU----------UGCG--AGCG- -5'
29979 3' -55.4 NC_006273.1 + 66762 0.7 0.842703
Target:  5'- uGGUGCgCGACCcgggCAGCCGcgGCUCGg -3'
miRNA:   3'- gUCACG-GUUGGa---GUCGGUugCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 67724 0.67 0.942937
Target:  5'- aCGGcgGCCGACCccgccguugCGGCCGcCGCUCa- -3'
miRNA:   3'- -GUCa-CGGUUGGa--------GUCGGUuGCGAGcg -5'
29979 3' -55.4 NC_006273.1 + 68044 0.74 0.617162
Target:  5'- aGGUGUgGG-CUCGGCCAGCGC-CGCc -3'
miRNA:   3'- gUCACGgUUgGAGUCGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 68199 0.71 0.782961
Target:  5'- ---cGCCGGCCUCcgcGGCCGcuGCGCcCGCc -3'
miRNA:   3'- gucaCGGUUGGAG---UCGGU--UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 68282 0.68 0.906067
Target:  5'- gCAG-GCCGACg-CGGCCcggaaAGCGCUCaGCg -3'
miRNA:   3'- -GUCaCGGUUGgaGUCGG-----UUGCGAG-CG- -5'
29979 3' -55.4 NC_006273.1 + 69656 0.7 0.850558
Target:  5'- gAGUGCCAACUUUuggcGCCAACugGCUCc- -3'
miRNA:   3'- gUCACGGUUGGAGu---CGGUUG--CGAGcg -5'
29979 3' -55.4 NC_006273.1 + 70443 0.67 0.947288
Target:  5'- -cGUaGCCGACCUgcugaaaGGCCAACGUguauuaguagCGCg -3'
miRNA:   3'- guCA-CGGUUGGAg------UCGGUUGCGa---------GCG- -5'
29979 3' -55.4 NC_006273.1 + 72253 0.68 0.91775
Target:  5'- uGGUGCCuccgccGCCUCAGCCGgaGCcCUCc- -3'
miRNA:   3'- gUCACGGu-----UGGAGUCGGU--UGcGAGcg -5'
29979 3' -55.4 NC_006273.1 + 73707 0.7 0.842703
Target:  5'- gAGUGCC-GCCgCAGCCGgcagaGCGCcgaaccccgUCGCa -3'
miRNA:   3'- gUCACGGuUGGaGUCGGU-----UGCG---------AGCG- -5'
29979 3' -55.4 NC_006273.1 + 79812 0.66 0.965736
Target:  5'- ---cGCCAcuacuGCCggAGCCGACGCUgaaaCGCc -3'
miRNA:   3'- gucaCGGU-----UGGagUCGGUUGCGA----GCG- -5'
29979 3' -55.4 NC_006273.1 + 84075 0.66 0.951012
Target:  5'- gAGUGCCAgaaaggggaacuGCCUCgagcggcGGCCcaggAACGCUUGa -3'
miRNA:   3'- gUCACGGU------------UGGAG-------UCGG----UUGCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 84596 0.66 0.965736
Target:  5'- -cGUGCgcgaaAGCUUCGGCCGGCuGCU-GCa -3'
miRNA:   3'- guCACGg----UUGGAGUCGGUUG-CGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 85697 0.66 0.955318
Target:  5'- cCAGUcGCCAccgGCCgcgcagcaaCAGCCAccuaACGC-CGCg -3'
miRNA:   3'- -GUCA-CGGU---UGGa--------GUCGGU----UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 86555 0.69 0.858222
Target:  5'- ---aGCCAgcgacgaucGCCgcCGGCCGGuCGCUCGCg -3'
miRNA:   3'- gucaCGGU---------UGGa-GUCGGUU-GCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 86724 0.69 0.858222
Target:  5'- gCAG-GCCGcaccacgagagcACCUCAGCCGccGCGUccaacgccgucUCGCg -3'
miRNA:   3'- -GUCaCGGU------------UGGAGUCGGU--UGCG-----------AGCG- -5'
29979 3' -55.4 NC_006273.1 + 87058 0.67 0.947288
Target:  5'- -cGUGCCAggacgGCCUC-GUCGucGCGCUCcaGCa -3'
miRNA:   3'- guCACGGU-----UGGAGuCGGU--UGCGAG--CG- -5'
29979 3' -55.4 NC_006273.1 + 87170 0.67 0.928516
Target:  5'- gGGUGCCAuacuCUUCAGa-GACGCguucCGCg -3'
miRNA:   3'- gUCACGGUu---GGAGUCggUUGCGa---GCG- -5'
29979 3' -55.4 NC_006273.1 + 87280 0.66 0.968792
Target:  5'- uCGGUGCaCAAauaaCUC-GCgGGcCGCUCGCu -3'
miRNA:   3'- -GUCACG-GUUg---GAGuCGgUU-GCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 87851 0.72 0.736217
Target:  5'- ---cGCCAGCCUCGucuucGCCGGCGUUCa- -3'
miRNA:   3'- gucaCGGUUGGAGU-----CGGUUGCGAGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.