miRNA display CGI


Results 1 - 20 of 144 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 234505 0.67 0.933553
Target:  5'- --aUGCCGuuGCgCUgGGCCAugGC-CGCg -3'
miRNA:   3'- gucACGGU--UG-GAgUCGGUugCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 233649 0.71 0.800804
Target:  5'- -cGUGCCGGCC-CAccGCCGGCGCa-GCu -3'
miRNA:   3'- guCACGGUUGGaGU--CGGUUGCGagCG- -5'
29979 3' -55.4 NC_006273.1 + 233513 0.67 0.928516
Target:  5'- aGGUGCCGACgCaCGGCCGuagcagcgACGCggggUGCg -3'
miRNA:   3'- gUCACGGUUG-GaGUCGGU--------UGCGa---GCG- -5'
29979 3' -55.4 NC_006273.1 + 233478 0.7 0.834664
Target:  5'- cCAGcGCCAGCCagccgCAGCacaGACGCUgGUu -3'
miRNA:   3'- -GUCaCGGUUGGa----GUCGg--UUGCGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 233443 0.66 0.965736
Target:  5'- ---cGCgCAACC-CAGCCAccGCGCggGCa -3'
miRNA:   3'- gucaCG-GUUGGaGUCGGU--UGCGagCG- -5'
29979 3' -55.4 NC_006273.1 + 232974 0.66 0.962475
Target:  5'- gCAGccGCCGcgcgGCCUCGGCgGcggGCGCcgacUCGCg -3'
miRNA:   3'- -GUCa-CGGU----UGGAGUCGgU---UGCG----AGCG- -5'
29979 3' -55.4 NC_006273.1 + 232827 0.69 0.880009
Target:  5'- gGGUGagcACCUCAGCCu-CGC-CGCg -3'
miRNA:   3'- gUCACgguUGGAGUCGGuuGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 231739 0.66 0.965736
Target:  5'- gCAGUGgCCccACCUCGgcauGCCGGCGC-CGg -3'
miRNA:   3'- -GUCAC-GGu-UGGAGU----CGGUUGCGaGCg -5'
29979 3' -55.4 NC_006273.1 + 230494 0.73 0.687292
Target:  5'- ---gGCCGGCUggUCGGUCGGCGCUCGg -3'
miRNA:   3'- gucaCGGUUGG--AGUCGGUUGCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 227580 0.67 0.928516
Target:  5'- uCGGUGacaCAGCUUCAGaaaCAACGUguguggCGCa -3'
miRNA:   3'- -GUCACg--GUUGGAGUCg--GUUGCGa-----GCG- -5'
29979 3' -55.4 NC_006273.1 + 218925 0.68 0.906067
Target:  5'- ---cGCCAACgCaggCGGCCAACGCgUCGg -3'
miRNA:   3'- gucaCGGUUG-Ga--GUCGGUUGCG-AGCg -5'
29979 3' -55.4 NC_006273.1 + 217863 0.68 0.911437
Target:  5'- aGGUGCCAACguucuuuCUCuGCCAaACGC-CGUu -3'
miRNA:   3'- gUCACGGUUG-------GAGuCGGU-UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 216508 0.66 0.962475
Target:  5'- uGGUGCCcagugcGCCgu-GCCAGCGCa-GCa -3'
miRNA:   3'- gUCACGGu-----UGGaguCGGUUGCGagCG- -5'
29979 3' -55.4 NC_006273.1 + 213849 0.69 0.872953
Target:  5'- ---cGCCGuCCUCGaaacGCCAGCGCcCGCc -3'
miRNA:   3'- gucaCGGUuGGAGU----CGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 211432 0.66 0.967594
Target:  5'- gCAG-GUCGGCCUCGGaCC-ACGCgaucucaaacaggCGCg -3'
miRNA:   3'- -GUCaCGGUUGGAGUC-GGuUGCGa------------GCG- -5'
29979 3' -55.4 NC_006273.1 + 206233 0.69 0.872953
Target:  5'- -cGUGCCAAUUUUuucgcuGCCAACGC-CGUc -3'
miRNA:   3'- guCACGGUUGGAGu-----CGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 204008 0.74 0.647304
Target:  5'- gCGGUGCCGACCUCGGaCCcAgGgaCGUa -3'
miRNA:   3'- -GUCACGGUUGGAGUC-GGuUgCgaGCG- -5'
29979 3' -55.4 NC_006273.1 + 203878 0.68 0.91775
Target:  5'- gGGuUGCCGGCgUgAGCCAGCGUUacccaacaGCa -3'
miRNA:   3'- gUC-ACGGUUGgAgUCGGUUGCGAg-------CG- -5'
29979 3' -55.4 NC_006273.1 + 198651 0.76 0.48989
Target:  5'- uCGG-GCCGAgCUguGCCGcCGCUCGCg -3'
miRNA:   3'- -GUCaCGGUUgGAguCGGUuGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 197666 0.68 0.923248
Target:  5'- uCAGUGCUcaggcaAGCgUCAGCUAuGCGCUC-Cg -3'
miRNA:   3'- -GUCACGG------UUGgAGUCGGU-UGCGAGcG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.