miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 196561 0.75 0.587117
Target:  5'- ---cGCUgcuGCCUCAGCCGGCGCUC-Cg -3'
miRNA:   3'- gucaCGGu--UGGAGUCGGUUGCGAGcG- -5'
29979 3' -55.4 NC_006273.1 + 193882 0.7 0.842703
Target:  5'- --cUGCCAuCCUCAcGCCGACGCcUGUc -3'
miRNA:   3'- gucACGGUuGGAGU-CGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 188524 0.7 0.842703
Target:  5'- cCGGUG-CAGCC--GGaCCAGCGCUCGUu -3'
miRNA:   3'- -GUCACgGUUGGagUC-GGUUGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 188479 0.67 0.940218
Target:  5'- ---cGCCucgGCCUCGGgagacgcgcgcagccCCAGCGCgUCGCg -3'
miRNA:   3'- gucaCGGu--UGGAGUC---------------GGUUGCG-AGCG- -5'
29979 3' -55.4 NC_006273.1 + 184417 0.68 0.893479
Target:  5'- cCGGUGUCuAUgUCGGCCGGCgguGCUgGCg -3'
miRNA:   3'- -GUCACGGuUGgAGUCGGUUG---CGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 183713 0.67 0.947288
Target:  5'- cCAG-GCCAccggGgCUCAGCCuucucACGCUCcgGCg -3'
miRNA:   3'- -GUCaCGGU----UgGAGUCGGu----UGCGAG--CG- -5'
29979 3' -55.4 NC_006273.1 + 180438 0.66 0.955318
Target:  5'- ---aGCCAGCaCUuccugacgauugCAGCUuuCGCUCGCu -3'
miRNA:   3'- gucaCGGUUG-GA------------GUCGGuuGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 179182 0.66 0.9502
Target:  5'- gCAGcGCCAGCCUUAGCUuucuugacuggccgGACGacaGCg -3'
miRNA:   3'- -GUCaCGGUUGGAGUCGG--------------UUGCgagCG- -5'
29979 3' -55.4 NC_006273.1 + 177022 0.67 0.933553
Target:  5'- uCGGuUGCCGcgGCuCUCcaucGCCAGCGCgCGCu -3'
miRNA:   3'- -GUC-ACGGU--UG-GAGu---CGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 175949 0.72 0.758994
Target:  5'- -cGUGCCGcaguacgacuuucugAUCUCGGCCGACccuuuCUCGCg -3'
miRNA:   3'- guCACGGU---------------UGGAGUCGGUUGc----GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 174105 0.74 0.647304
Target:  5'- -cGUGUacaCGGCCUCGGCCGcgcGCGC-CGCg -3'
miRNA:   3'- guCACG---GUUGGAGUCGGU---UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 171523 0.67 0.938359
Target:  5'- ---aGCCGAUCgCGGCgAACcaGCUCGCg -3'
miRNA:   3'- gucaCGGUUGGaGUCGgUUG--CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 171473 0.69 0.886852
Target:  5'- ---cGCgAACaCUCAGCaGGCGCUCGUu -3'
miRNA:   3'- gucaCGgUUG-GAGUCGgUUGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 171116 0.7 0.81806
Target:  5'- aGGcGCCAuccGCUUCGGCCGcCGC-CGCa -3'
miRNA:   3'- gUCaCGGU---UGGAGUCGGUuGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 167969 0.66 0.955318
Target:  5'- --uUGCCGGCCUCuucuuGCCAuucACGUUCcaGCc -3'
miRNA:   3'- gucACGGUUGGAGu----CGGU---UGCGAG--CG- -5'
29979 3' -55.4 NC_006273.1 + 167027 0.67 0.947288
Target:  5'- ---cGCCGugCUCAGCUGcucgucGCGUugUCGCa -3'
miRNA:   3'- gucaCGGUugGAGUCGGU------UGCG--AGCG- -5'
29979 3' -55.4 NC_006273.1 + 165960 0.67 0.947288
Target:  5'- gCGGcGCCGccauGCCaggggUCGGCCAuCGuCUCGCa -3'
miRNA:   3'- -GUCaCGGU----UGG-----AGUCGGUuGC-GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 164267 0.67 0.938359
Target:  5'- aAGUGCC-GCCgUCGGUCGAUcagguaCUCGCa -3'
miRNA:   3'- gUCACGGuUGG-AGUCGGUUGc-----GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 162038 0.66 0.951414
Target:  5'- uGGUGCUGGCUcuUCuGCUggUGCUgGCu -3'
miRNA:   3'- gUCACGGUUGG--AGuCGGuuGCGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 161643 0.72 0.726572
Target:  5'- --cUGCCgGGCCUCGGCCGcCGC-CGCc -3'
miRNA:   3'- gucACGG-UUGGAGUCGGUuGCGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.