miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 160125 0.71 0.782961
Target:  5'- gAGgcgGCC-GCCgcggCGGCCAGCGCUuCGUc -3'
miRNA:   3'- gUCa--CGGuUGGa---GUCGGUUGCGA-GCG- -5'
29979 3' -55.4 NC_006273.1 + 159301 0.71 0.804305
Target:  5'- cCGGUGCCGGCCcacauauagaaaagCAGCUgcacgaAGCGgUCGCg -3'
miRNA:   3'- -GUCACGGUUGGa-------------GUCGG------UUGCgAGCG- -5'
29979 3' -55.4 NC_006273.1 + 158767 0.69 0.886852
Target:  5'- gAGgccGCCGGCCgCGGCC-ACGgaCGCg -3'
miRNA:   3'- gUCa--CGGUUGGaGUCGGuUGCgaGCG- -5'
29979 3' -55.4 NC_006273.1 + 156707 0.68 0.899885
Target:  5'- gCGGUGCCcgcgGACCcCGGCCccuucuCGCgugCGCg -3'
miRNA:   3'- -GUCACGG----UUGGaGUCGGuu----GCGa--GCG- -5'
29979 3' -55.4 NC_006273.1 + 155560 0.66 0.959003
Target:  5'- uGGUGCagcgCGGCCUuucgCGGCUggUGCUaCGCg -3'
miRNA:   3'- gUCACG----GUUGGA----GUCGGuuGCGA-GCG- -5'
29979 3' -55.4 NC_006273.1 + 154424 0.66 0.965736
Target:  5'- -cGUGcCCGACgaCAGCuCGugGC-CGCg -3'
miRNA:   3'- guCAC-GGUUGgaGUCG-GUugCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 153775 0.66 0.955318
Target:  5'- aAG-GCC-GCUUCGGCCucCGC-CGCg -3'
miRNA:   3'- gUCaCGGuUGGAGUCGGuuGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 153608 0.66 0.951414
Target:  5'- gCGGUGCgGucgcgggugGCCggcGUCAGCGUUCGCa -3'
miRNA:   3'- -GUCACGgU---------UGGaguCGGUUGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 152889 0.66 0.9651
Target:  5'- -cGUGUaacuuccacuCCUCGGCCAcGCGC-CGCa -3'
miRNA:   3'- guCACGguu-------GGAGUCGGU-UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 151254 0.66 0.965736
Target:  5'- uCAGUGCUAcaguuCCUaCAGCCG-CGUUauaGCa -3'
miRNA:   3'- -GUCACGGUu----GGA-GUCGGUuGCGAg--CG- -5'
29979 3' -55.4 NC_006273.1 + 150562 0.69 0.872953
Target:  5'- aCGG-GCCAACCguccaCGGUCuuACGCUCGg -3'
miRNA:   3'- -GUCaCGGUUGGa----GUCGGu-UGCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 147912 0.69 0.872953
Target:  5'- ---cGCUGGCCUCGGCCGugacuACGgaCGCc -3'
miRNA:   3'- gucaCGGUUGGAGUCGGU-----UGCgaGCG- -5'
29979 3' -55.4 NC_006273.1 + 147821 0.68 0.899885
Target:  5'- -cGUGCCgAGCCgCGGCUucacACGUUCGUg -3'
miRNA:   3'- guCACGG-UUGGaGUCGGu---UGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 147384 0.69 0.858222
Target:  5'- aGGUGCaCGACCU--GUCGGCGCucuUCGCg -3'
miRNA:   3'- gUCACG-GUUGGAguCGGUUGCG---AGCG- -5'
29979 3' -55.4 NC_006273.1 + 144577 0.66 0.968792
Target:  5'- -cGUGCCGGCCguaAGCgaGACGCUUu- -3'
miRNA:   3'- guCACGGUUGGag-UCGg-UUGCGAGcg -5'
29979 3' -55.4 NC_006273.1 + 142105 0.68 0.899885
Target:  5'- --cUGCCGcgaaACCUCGGCCAugugguCGUUCGa -3'
miRNA:   3'- gucACGGU----UGGAGUCGGUu-----GCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 140882 0.72 0.716848
Target:  5'- aGGUGCCcGCCU-GGCCGGC-CUCGUc -3'
miRNA:   3'- gUCACGGuUGGAgUCGGUUGcGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 140721 0.67 0.928516
Target:  5'- uGGUGgCGGCggCggGGCCGGCGCUUGUg -3'
miRNA:   3'- gUCACgGUUGgaG--UCGGUUGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 137182 0.69 0.858222
Target:  5'- gGGUGCCGccgcuGCCgcUCAgcgagcucgucGCCAGCGCgagCGCu -3'
miRNA:   3'- gUCACGGU-----UGG--AGU-----------CGGUUGCGa--GCG- -5'
29979 3' -55.4 NC_006273.1 + 134204 0.66 0.962475
Target:  5'- uGGUGUCGguaggcGCCUaCGGCCGccACGCcCGUg -3'
miRNA:   3'- gUCACGGU------UGGA-GUCGGU--UGCGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.