miRNA display CGI


Results 61 - 80 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 133745 0.76 0.528037
Target:  5'- -cGUGCCGucguGCCuUCGGCCAGCGUgaCGCg -3'
miRNA:   3'- guCACGGU----UGG-AGUCGGUUGCGa-GCG- -5'
29979 3' -55.4 NC_006273.1 + 130408 0.68 0.906067
Target:  5'- cCAGacUGUCGGCCUCGGaCAugGCaaacUCGCc -3'
miRNA:   3'- -GUC--ACGGUUGGAGUCgGUugCG----AGCG- -5'
29979 3' -55.4 NC_006273.1 + 129546 0.69 0.886852
Target:  5'- ---cGCCGcgccGCCUCGGCUguGACGCUCu- -3'
miRNA:   3'- gucaCGGU----UGGAGUCGG--UUGCGAGcg -5'
29979 3' -55.4 NC_006273.1 + 124449 0.67 0.933553
Target:  5'- -cGUGCgCGG-CUC-GCCGACGCUgCGCu -3'
miRNA:   3'- guCACG-GUUgGAGuCGGUUGCGA-GCG- -5'
29979 3' -55.4 NC_006273.1 + 120495 0.68 0.899885
Target:  5'- cCGGUGCCGGCCgc-GCUAGCGggCuGCa -3'
miRNA:   3'- -GUCACGGUUGGaguCGGUUGCgaG-CG- -5'
29979 3' -55.4 NC_006273.1 + 119548 0.66 0.962475
Target:  5'- ---cGCCAccACCUCGGCgCGAUGCgUGUa -3'
miRNA:   3'- gucaCGGU--UGGAGUCG-GUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 119420 0.69 0.864211
Target:  5'- ---cGCCcgUCUCAGCCAGCGCcuaugucacccgCGCu -3'
miRNA:   3'- gucaCGGuuGGAGUCGGUUGCGa-----------GCG- -5'
29979 3' -55.4 NC_006273.1 + 118265 0.67 0.942937
Target:  5'- aGGUGCCAagguagcugagcGCgCUCAgGCCGGCGUggugaaCGCc -3'
miRNA:   3'- gUCACGGU------------UG-GAGU-CGGUUGCGa-----GCG- -5'
29979 3' -55.4 NC_006273.1 + 118240 0.72 0.726572
Target:  5'- ---cGCC-GCCUCAGgCGaaACGCUCGCc -3'
miRNA:   3'- gucaCGGuUGGAGUCgGU--UGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 118203 0.66 0.965736
Target:  5'- ---cGCCcgAACgCUCGGCgGACGC-CGCu -3'
miRNA:   3'- gucaCGG--UUG-GAGUCGgUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 117155 0.68 0.906067
Target:  5'- aAGUGCCGuggguguuucuCCUCcGCCAcucgucaGCUCGCu -3'
miRNA:   3'- gUCACGGUu----------GGAGuCGGUug-----CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 117112 0.67 0.928516
Target:  5'- ---cGCCGGCCUgAGC--GCGCUCaGCu -3'
miRNA:   3'- gucaCGGUUGGAgUCGguUGCGAG-CG- -5'
29979 3' -55.4 NC_006273.1 + 117061 0.66 0.951414
Target:  5'- --uUGCC-GCCUCAGaacCCGACGCgguaGCg -3'
miRNA:   3'- gucACGGuUGGAGUC---GGUUGCGag--CG- -5'
29979 3' -55.4 NC_006273.1 + 116760 0.73 0.67734
Target:  5'- gCAGcuaGCCGGCCUCucgcucuccAGCCGGCGCU-GCg -3'
miRNA:   3'- -GUCa--CGGUUGGAG---------UCGGUUGCGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 111276 0.68 0.906067
Target:  5'- ---cGCCGAgCUCuGUCGACGC-CGCc -3'
miRNA:   3'- gucaCGGUUgGAGuCGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 106936 0.69 0.880009
Target:  5'- uCGG-GCCAACCgcauuuGcCCAACGaCUCGCu -3'
miRNA:   3'- -GUCaCGGUUGGagu---C-GGUUGC-GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 104533 0.69 0.872953
Target:  5'- gCAGUGaCAGCUUguGaCCcGCGCUCGUc -3'
miRNA:   3'- -GUCACgGUUGGAguC-GGuUGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 102990 0.7 0.842703
Target:  5'- -cGUGCCAACC-CGGCgucgGACGCUCc- -3'
miRNA:   3'- guCACGGUUGGaGUCGg---UUGCGAGcg -5'
29979 3' -55.4 NC_006273.1 + 102900 0.7 0.842703
Target:  5'- gGGUGCCggUCggggugcgugUAGCCAAagagGCUCGCc -3'
miRNA:   3'- gUCACGGuuGGa---------GUCGGUUg---CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 100840 0.68 0.899885
Target:  5'- gGGUGCCAGacguagacUCUCGGCCGuguaGCGCugaaggUCGUa -3'
miRNA:   3'- gUCACGGUU--------GGAGUCGGU----UGCG------AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.