miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 158767 0.69 0.886852
Target:  5'- gAGgccGCCGGCCgCGGCC-ACGgaCGCg -3'
miRNA:   3'- gUCa--CGGUUGGaGUCGGuUGCgaGCG- -5'
29979 3' -55.4 NC_006273.1 + 4896 0.69 0.858222
Target:  5'- gAGcGCCGACCgacCAGCCGGcCGaUUCGCc -3'
miRNA:   3'- gUCaCGGUUGGa--GUCGGUU-GC-GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 137182 0.69 0.858222
Target:  5'- gGGUGCCGccgcuGCCgcUCAgcgagcucgucGCCAGCGCgagCGCu -3'
miRNA:   3'- gUCACGGU-----UGG--AGU-----------CGGUUGCGa--GCG- -5'
29979 3' -55.4 NC_006273.1 + 61259 0.69 0.872953
Target:  5'- aGGU-CCAGCCacugCAGCgCGGCGCgCGCg -3'
miRNA:   3'- gUCAcGGUUGGa---GUCG-GUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 150562 0.69 0.872953
Target:  5'- aCGG-GCCAACCguccaCGGUCuuACGCUCGg -3'
miRNA:   3'- -GUCaCGGUUGGa----GUCGGu-UGCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 147912 0.69 0.872953
Target:  5'- ---cGCUGGCCUCGGCCGugacuACGgaCGCc -3'
miRNA:   3'- gucaCGGUUGGAGUCGGU-----UGCgaGCG- -5'
29979 3' -55.4 NC_006273.1 + 232827 0.69 0.880009
Target:  5'- gGGUGagcACCUCAGCCu-CGC-CGCg -3'
miRNA:   3'- gUCACgguUGGAGUCGGuuGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 45251 0.69 0.880009
Target:  5'- -cGUGCC-GCC-CGGCgGcUGCUCGCg -3'
miRNA:   3'- guCACGGuUGGaGUCGgUuGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 129546 0.69 0.886852
Target:  5'- ---cGCCGcgccGCCUCGGCUguGACGCUCu- -3'
miRNA:   3'- gucaCGGU----UGGAGUCGG--UUGCGAGcg -5'
29979 3' -55.4 NC_006273.1 + 102900 0.7 0.842703
Target:  5'- gGGUGCCggUCggggugcgugUAGCCAAagagGCUCGCc -3'
miRNA:   3'- gUCACGGuuGGa---------GUCGGUUg---CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 66762 0.7 0.842703
Target:  5'- uGGUGCgCGACCcgggCAGCCGcgGCUCGg -3'
miRNA:   3'- gUCACG-GUUGGa---GUCGGUugCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 47306 0.7 0.842703
Target:  5'- gCAGU-CCGGCCUucCAGCCGAUGCU-GUa -3'
miRNA:   3'- -GUCAcGGUUGGA--GUCGGUUGCGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 196561 0.75 0.587117
Target:  5'- ---cGCUgcuGCCUCAGCCGGCGCUC-Cg -3'
miRNA:   3'- gucaCGGu--UGGAGUCGGUUGCGAGcG- -5'
29979 3' -55.4 NC_006273.1 + 37011 0.74 0.645295
Target:  5'- gCAGUGCUccagaucGAUCUCAGUCAGCgagugcggcgaauGCUCGCc -3'
miRNA:   3'- -GUCACGG-------UUGGAGUCGGUUG-------------CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 204008 0.74 0.647304
Target:  5'- gCGGUGCCGACCUCGGaCCcAgGgaCGUa -3'
miRNA:   3'- -GUCACGGUUGGAGUC-GGuUgCgaGCG- -5'
29979 3' -55.4 NC_006273.1 + 116760 0.73 0.67734
Target:  5'- gCAGcuaGCCGGCCUCucgcucuccAGCCGGCGCU-GCg -3'
miRNA:   3'- -GUCa--CGGUUGGAG---------UCGGUUGCGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 140882 0.72 0.716848
Target:  5'- aGGUGCCcGCCU-GGCCGGC-CUCGUc -3'
miRNA:   3'- gUCACGGuUGGAgUCGGUUGcGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 87851 0.72 0.736217
Target:  5'- ---cGCCAGCCUCGucuucGCCGGCGUUCa- -3'
miRNA:   3'- gucaCGGUUGGAGU-----CGGUUGCGAGcg -5'
29979 3' -55.4 NC_006273.1 + 233649 0.71 0.800804
Target:  5'- -cGUGCCGGCC-CAccGCCGGCGCa-GCu -3'
miRNA:   3'- guCACGGUUGGaGU--CGGUUGCGagCG- -5'
29979 3' -55.4 NC_006273.1 + 233478 0.7 0.834664
Target:  5'- cCAGcGCCAGCCagccgCAGCacaGACGCUgGUu -3'
miRNA:   3'- -GUCaCGGUUGGa----GUCGg--UUGCGAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.