miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 140882 0.72 0.716848
Target:  5'- aGGUGCCcGCCU-GGCCGGC-CUCGUc -3'
miRNA:   3'- gUCACGGuUGGAgUCGGUUGcGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 116760 0.73 0.67734
Target:  5'- gCAGcuaGCCGGCCUCucgcucuccAGCCGGCGCU-GCg -3'
miRNA:   3'- -GUCa--CGGUUGGAG---------UCGGUUGCGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 204008 0.74 0.647304
Target:  5'- gCGGUGCCGACCUCGGaCCcAgGgaCGUa -3'
miRNA:   3'- -GUCACGGUUGGAGUC-GGuUgCgaGCG- -5'
29979 3' -55.4 NC_006273.1 + 37011 0.74 0.645295
Target:  5'- gCAGUGCUccagaucGAUCUCAGUCAGCgagugcggcgaauGCUCGCc -3'
miRNA:   3'- -GUCACGG-------UUGGAGUCGGUUG-------------CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 196561 0.75 0.587117
Target:  5'- ---cGCUgcuGCCUCAGCCGGCGCUC-Cg -3'
miRNA:   3'- gucaCGGu--UGGAGUCGGUUGCGAGcG- -5'
29979 3' -55.4 NC_006273.1 + 61259 0.69 0.872953
Target:  5'- aGGU-CCAGCCacugCAGCgCGGCGCgCGCg -3'
miRNA:   3'- gUCAcGGUUGGa---GUCG-GUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 150562 0.69 0.872953
Target:  5'- aCGG-GCCAACCguccaCGGUCuuACGCUCGg -3'
miRNA:   3'- -GUCaCGGUUGGa----GUCGGu-UGCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 218925 0.68 0.906067
Target:  5'- ---cGCCAACgCaggCGGCCAACGCgUCGg -3'
miRNA:   3'- gucaCGGUUG-Ga--GUCGGUUGCG-AGCg -5'
29979 3' -55.4 NC_006273.1 + 35417 0.68 0.906067
Target:  5'- ---cGUCGGCCUCGGCC-ACGUUC-Ca -3'
miRNA:   3'- gucaCGGUUGGAGUCGGuUGCGAGcG- -5'
29979 3' -55.4 NC_006273.1 + 68282 0.68 0.906067
Target:  5'- gCAG-GCCGACg-CGGCCcggaaAGCGCUCaGCg -3'
miRNA:   3'- -GUCaCGGUUGgaGUCGG-----UUGCGAG-CG- -5'
29979 3' -55.4 NC_006273.1 + 142105 0.68 0.899885
Target:  5'- --cUGCCGcgaaACCUCGGCCAugugguCGUUCGa -3'
miRNA:   3'- gucACGGU----UGGAGUCGGUu-----GCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 156707 0.68 0.899885
Target:  5'- gCGGUGCCcgcgGACCcCGGCCccuucuCGCgugCGCg -3'
miRNA:   3'- -GUCACGG----UUGGaGUCGGuu----GCGa--GCG- -5'
29979 3' -55.4 NC_006273.1 + 147821 0.68 0.899885
Target:  5'- -cGUGCCgAGCCgCGGCUucacACGUUCGUg -3'
miRNA:   3'- guCACGG-UUGGaGUCGGu---UGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 100840 0.68 0.899885
Target:  5'- gGGUGCCAGacguagacUCUCGGCCGuguaGCGCugaaggUCGUa -3'
miRNA:   3'- gUCACGGUU--------GGAGUCGGU----UGCG------AGCG- -5'
29979 3' -55.4 NC_006273.1 + 184417 0.68 0.893479
Target:  5'- cCGGUGUCuAUgUCGGCCGGCgguGCUgGCg -3'
miRNA:   3'- -GUCACGGuUGgAGUCGGUUG---CGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 158767 0.69 0.886852
Target:  5'- gAGgccGCCGGCCgCGGCC-ACGgaCGCg -3'
miRNA:   3'- gUCa--CGGUUGGaGUCGGuUGCgaGCG- -5'
29979 3' -55.4 NC_006273.1 + 129546 0.69 0.886852
Target:  5'- ---cGCCGcgccGCCUCGGCUguGACGCUCu- -3'
miRNA:   3'- gucaCGGU----UGGAGUCGG--UUGCGAGcg -5'
29979 3' -55.4 NC_006273.1 + 45251 0.69 0.880009
Target:  5'- -cGUGCC-GCC-CGGCgGcUGCUCGCg -3'
miRNA:   3'- guCACGGuUGGaGUCGgUuGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 232827 0.69 0.880009
Target:  5'- gGGUGagcACCUCAGCCu-CGC-CGCg -3'
miRNA:   3'- gUCACgguUGGAGUCGGuuGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 147912 0.69 0.872953
Target:  5'- ---cGCUGGCCUCGGCCGugacuACGgaCGCc -3'
miRNA:   3'- gucaCGGUUGGAGUCGGU-----UGCgaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.