Results 1 - 20 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29979 | 3' | -55.4 | NC_006273.1 | + | 7015 | 1.11 | 0.003641 |
Target: 5'- aCAGUGCCAACCUCAGCCAACGCUCGCc -3' miRNA: 3'- -GUCACGGUUGGAGUCGGUUGCGAGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 73707 | 0.7 | 0.842703 |
Target: 5'- gAGUGCC-GCCgCAGCCGgcagaGCGCcgaaccccgUCGCa -3' miRNA: 3'- gUCACGGuUGGaGUCGGU-----UGCG---------AGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 188524 | 0.7 | 0.842703 |
Target: 5'- cCGGUG-CAGCC--GGaCCAGCGCUCGUu -3' miRNA: 3'- -GUCACgGUUGGagUC-GGUUGCGAGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 39612 | 0.66 | 0.968792 |
Target: 5'- --aUGCCGuuGCgCUgGGCCAugGC-CGCc -3' miRNA: 3'- gucACGGU--UG-GAgUCGGUugCGaGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 174105 | 0.74 | 0.647304 |
Target: 5'- -cGUGUacaCGGCCUCGGCCGcgcGCGC-CGCg -3' miRNA: 3'- guCACG---GUUGGAGUCGGU---UGCGaGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 230494 | 0.73 | 0.687292 |
Target: 5'- ---gGCCGGCUggUCGGUCGGCGCUCGg -3' miRNA: 3'- gucaCGGUUGG--AGUCGGUUGCGAGCg -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 118240 | 0.72 | 0.726572 |
Target: 5'- ---cGCC-GCCUCAGgCGaaACGCUCGCc -3' miRNA: 3'- gucaCGGuUGGAGUCgGU--UGCGAGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 175949 | 0.72 | 0.758994 |
Target: 5'- -cGUGCCGcaguacgacuuucugAUCUCGGCCGACccuuuCUCGCg -3' miRNA: 3'- guCACGGU---------------UGGAGUCGGUUGc----GAGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 68199 | 0.71 | 0.782961 |
Target: 5'- ---cGCCGGCCUCcgcGGCCGcuGCGCcCGCc -3' miRNA: 3'- gucaCGGUUGGAG---UCGGU--UGCGaGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 38585 | 0.7 | 0.834664 |
Target: 5'- cCAGcGCCAGCCagccgCAGCacaGACGCUgGUu -3' miRNA: 3'- -GUCaCGGUUGGa----GUCGg--UUGCGAgCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 4538 | 0.71 | 0.800804 |
Target: 5'- ----aCCAACCUCAGCCAgacaaGCGCUUuucgGCg -3' miRNA: 3'- gucacGGUUGGAGUCGGU-----UGCGAG----CG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 160125 | 0.71 | 0.782961 |
Target: 5'- gAGgcgGCC-GCCgcggCGGCCAGCGCUuCGUc -3' miRNA: 3'- gUCa--CGGuUGGa---GUCGGUUGCGA-GCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 198651 | 0.76 | 0.48989 |
Target: 5'- uCGG-GCCGAgCUguGCCGcCGCUCGCg -3' miRNA: 3'- -GUCaCGGUUgGAguCGGUuGCGAGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 159301 | 0.71 | 0.804305 |
Target: 5'- cCGGUGCCGGCCcacauauagaaaagCAGCUgcacgaAGCGgUCGCg -3' miRNA: 3'- -GUCACGGUUGGa-------------GUCGG------UUGCgAGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 1668 | 0.75 | 0.587117 |
Target: 5'- ---cGCUgcuGCCUCAGCCGGCGCUC-Cg -3' miRNA: 3'- gucaCGGu--UGGAGUCGGUUGCGAGcG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 45585 | 0.71 | 0.764595 |
Target: 5'- aAGcUGCCGugCaggCGGCCAugGC-CGCg -3' miRNA: 3'- gUC-ACGGUugGa--GUCGGUugCGaGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 171116 | 0.7 | 0.81806 |
Target: 5'- aGGcGCCAuccGCUUCGGCCGcCGC-CGCa -3' miRNA: 3'- gUCaCGGU---UGGAGUCGGUuGCGaGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 102990 | 0.7 | 0.842703 |
Target: 5'- -cGUGCCAACC-CGGCgucgGACGCUCc- -3' miRNA: 3'- guCACGGUUGGaGUCGg---UUGCGAGcg -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 68044 | 0.74 | 0.617162 |
Target: 5'- aGGUGUgGG-CUCGGCCAGCGC-CGCc -3' miRNA: 3'- gUCACGgUUgGAGUCGGUUGCGaGCG- -5' |
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29979 | 3' | -55.4 | NC_006273.1 | + | 161643 | 0.72 | 0.726572 |
Target: 5'- --cUGCCgGGCCUCGGCCGcCGC-CGCc -3' miRNA: 3'- gucACGG-UUGGAGUCGGUuGCGaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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