miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 86724 0.69 0.858222
Target:  5'- gCAG-GCCGcaccacgagagcACCUCAGCCGccGCGUccaacgccgucUCGCg -3'
miRNA:   3'- -GUCaCGGU------------UGGAGUCGGU--UGCG-----------AGCG- -5'
29979 3' -55.4 NC_006273.1 + 188524 0.7 0.842703
Target:  5'- cCGGUG-CAGCC--GGaCCAGCGCUCGUu -3'
miRNA:   3'- -GUCACgGUUGGagUC-GGUUGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 160125 0.71 0.782961
Target:  5'- gAGgcgGCC-GCCgcggCGGCCAGCGCUuCGUc -3'
miRNA:   3'- gUCa--CGGuUGGa---GUCGGUUGCGA-GCG- -5'
29979 3' -55.4 NC_006273.1 + 68044 0.74 0.617162
Target:  5'- aGGUGUgGG-CUCGGCCAGCGC-CGCc -3'
miRNA:   3'- gUCACGgUUgGAGUCGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 31910 0.68 0.893479
Target:  5'- uGGUGCCAGCCUCGGuaCCAuauACGUauuUCa- -3'
miRNA:   3'- gUCACGGUUGGAGUC--GGU---UGCG---AGcg -5'
29979 3' -55.4 NC_006273.1 + 92245 0.69 0.872953
Target:  5'- -cGUGCCcgUCUCcugaaagacGGCCAcacaGCGCUCGUu -3'
miRNA:   3'- guCACGGuuGGAG---------UCGGU----UGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 73707 0.7 0.842703
Target:  5'- gAGUGCC-GCCgCAGCCGgcagaGCGCcgaaccccgUCGCa -3'
miRNA:   3'- gUCACGGuUGGaGUCGGU-----UGCG---------AGCG- -5'
29979 3' -55.4 NC_006273.1 + 1668 0.75 0.587117
Target:  5'- ---cGCUgcuGCCUCAGCCGGCGCUC-Cg -3'
miRNA:   3'- gucaCGGu--UGGAGUCGGUUGCGAGcG- -5'
29979 3' -55.4 NC_006273.1 + 104533 0.69 0.872953
Target:  5'- gCAGUGaCAGCUUguGaCCcGCGCUCGUc -3'
miRNA:   3'- -GUCACgGUUGGAguC-GGuUGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 198651 0.76 0.48989
Target:  5'- uCGG-GCCGAgCUguGCCGcCGCUCGCg -3'
miRNA:   3'- -GUCaCGGUUgGAguCGGUuGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 102990 0.7 0.842703
Target:  5'- -cGUGCCAACC-CGGCgucgGACGCUCc- -3'
miRNA:   3'- guCACGGUUGGaGUCGg---UUGCGAGcg -5'
29979 3' -55.4 NC_006273.1 + 86555 0.69 0.858222
Target:  5'- ---aGCCAgcgacgaucGCCgcCGGCCGGuCGCUCGCg -3'
miRNA:   3'- gucaCGGU---------UGGa-GUCGGUU-GCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 159301 0.71 0.804305
Target:  5'- cCGGUGCCGGCCcacauauagaaaagCAGCUgcacgaAGCGgUCGCg -3'
miRNA:   3'- -GUCACGGUUGGa-------------GUCGG------UUGCgAGCG- -5'
29979 3' -55.4 NC_006273.1 + 68199 0.71 0.782961
Target:  5'- ---cGCCGGCCUCcgcGGCCGcuGCGCcCGCc -3'
miRNA:   3'- gucaCGGUUGGAG---UCGGU--UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 118240 0.72 0.726572
Target:  5'- ---cGCC-GCCUCAGgCGaaACGCUCGCc -3'
miRNA:   3'- gucaCGGuUGGAGUCgGU--UGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 174105 0.74 0.647304
Target:  5'- -cGUGUacaCGGCCUCGGCCGcgcGCGC-CGCg -3'
miRNA:   3'- guCACG---GUUGGAGUCGGU---UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 111276 0.68 0.906067
Target:  5'- ---cGCCGAgCUCuGUCGACGC-CGCc -3'
miRNA:   3'- gucaCGGUUgGAGuCGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 120495 0.68 0.899885
Target:  5'- cCGGUGCCGGCCgc-GCUAGCGggCuGCa -3'
miRNA:   3'- -GUCACGGUUGGaguCGGUUGCgaG-CG- -5'
29979 3' -55.4 NC_006273.1 + 106936 0.69 0.880009
Target:  5'- uCGG-GCCAACCgcauuuGcCCAACGaCUCGCu -3'
miRNA:   3'- -GUCaCGGUUGGagu---C-GGUUGC-GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 206233 0.69 0.872953
Target:  5'- -cGUGCCAAUUUUuucgcuGCCAACGC-CGUc -3'
miRNA:   3'- guCACGGUUGGAGu-----CGGUUGCGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.