miRNA display CGI


Results 61 - 80 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29979 3' -55.4 NC_006273.1 + 84075 0.66 0.951012
Target:  5'- gAGUGCCAgaaaggggaacuGCCUCgagcggcGGCCcaggAACGCUUGa -3'
miRNA:   3'- gUCACGGU------------UGGAG-------UCGG----UUGCGAGCg -5'
29979 3' -55.4 NC_006273.1 + 102990 0.7 0.842703
Target:  5'- -cGUGCCAACC-CGGCgucgGACGCUCc- -3'
miRNA:   3'- guCACGGUUGGaGUCGg---UUGCGAGcg -5'
29979 3' -55.4 NC_006273.1 + 69656 0.7 0.850558
Target:  5'- gAGUGCCAACUUUuggcGCCAACugGCUCc- -3'
miRNA:   3'- gUCACGGUUGGAGu---CGGUUG--CGAGcg -5'
29979 3' -55.4 NC_006273.1 + 119420 0.69 0.864211
Target:  5'- ---cGCCcgUCUCAGCCAGCGCcuaugucacccgCGCu -3'
miRNA:   3'- gucaCGGuuGGAGUCGGUUGCGa-----------GCG- -5'
29979 3' -55.4 NC_006273.1 + 92245 0.69 0.872953
Target:  5'- -cGUGCCcgUCUCcugaaagacGGCCAcacaGCGCUCGUu -3'
miRNA:   3'- guCACGGuuGGAG---------UCGGU----UGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 213849 0.69 0.872953
Target:  5'- ---cGCCGuCCUCGaaacGCCAGCGCcCGCc -3'
miRNA:   3'- gucaCGGUuGGAGU----CGGUUGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 106936 0.69 0.880009
Target:  5'- uCGG-GCCAACCgcauuuGcCCAACGaCUCGCu -3'
miRNA:   3'- -GUCaCGGUUGGagu---C-GGUUGC-GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 38620 0.68 0.892826
Target:  5'- aGGUGCCGacgcacgGCCgUCAGCagCGACGCggggUGCg -3'
miRNA:   3'- gUCACGGU-------UGG-AGUCG--GUUGCGa---GCG- -5'
29979 3' -55.4 NC_006273.1 + 154424 0.66 0.965736
Target:  5'- -cGUGcCCGACgaCAGCuCGugGC-CGCg -3'
miRNA:   3'- guCAC-GGUUGgaGUCG-GUugCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 151254 0.66 0.965736
Target:  5'- uCAGUGCUAcaguuCCUaCAGCCG-CGUUauaGCa -3'
miRNA:   3'- -GUCACGGUu----GGA-GUCGGUuGCGAg--CG- -5'
29979 3' -55.4 NC_006273.1 + 85697 0.66 0.955318
Target:  5'- cCAGUcGCCAccgGCCgcgcagcaaCAGCCAccuaACGC-CGCg -3'
miRNA:   3'- -GUCA-CGGU---UGGa--------GUCGGU----UGCGaGCG- -5'
29979 3' -55.4 NC_006273.1 + 22265 0.67 0.933553
Target:  5'- -cGUGCCGcuCCaucgCAGCCAcGCGCUgGUg -3'
miRNA:   3'- guCACGGUu-GGa---GUCGGU-UGCGAgCG- -5'
29979 3' -55.4 NC_006273.1 + 91183 0.67 0.938359
Target:  5'- -cGUGCCGgucgucgcACCgcUCGGCCAcGCGCUC-Ca -3'
miRNA:   3'- guCACGGU--------UGG--AGUCGGU-UGCGAGcG- -5'
29979 3' -55.4 NC_006273.1 + 165960 0.67 0.947288
Target:  5'- gCGGcGCCGccauGCCaggggUCGGCCAuCGuCUCGCa -3'
miRNA:   3'- -GUCaCGGU----UGG-----AGUCGGUuGC-GAGCG- -5'
29979 3' -55.4 NC_006273.1 + 46245 0.67 0.947288
Target:  5'- --uUGUCGuCCUCGGCCAGCG-UCGa -3'
miRNA:   3'- gucACGGUuGGAGUCGGUUGCgAGCg -5'
29979 3' -55.4 NC_006273.1 + 153608 0.66 0.951414
Target:  5'- gCGGUGCgGucgcgggugGCCggcGUCAGCGUUCGCa -3'
miRNA:   3'- -GUCACGgU---------UGGaguCGGUUGCGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 62810 0.66 0.965736
Target:  5'- uGGcGCUGAUC-CAGCCGGCcagucagaagaGCUCGCu -3'
miRNA:   3'- gUCaCGGUUGGaGUCGGUUG-----------CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 51687 0.66 0.965736
Target:  5'- cCGGUgGCCugGAUgUgGGCCAACgaauugGCUCGCa -3'
miRNA:   3'- -GUCA-CGG--UUGgAgUCGGUUG------CGAGCG- -5'
29979 3' -55.4 NC_006273.1 + 233443 0.66 0.965736
Target:  5'- ---cGCgCAACC-CAGCCAccGCGCggGCa -3'
miRNA:   3'- gucaCG-GUUGGaGUCGGU--UGCGagCG- -5'
29979 3' -55.4 NC_006273.1 + 21884 0.68 0.91775
Target:  5'- -uGUGCguGCCcuucaUCAGCCAGaGCaUCGCg -3'
miRNA:   3'- guCACGguUGG-----AGUCGGUUgCG-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.