miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 92598 0.66 0.919107
Target:  5'- ---cCGCCGUGCCCaagaauGCGgaaGCCaGCGUg -3'
miRNA:   3'- uuauGCGGCAUGGGgu----UGC---CGG-CGCG- -5'
29981 3' -58 NC_006273.1 + 145161 0.66 0.919107
Target:  5'- --cGCGCCGcucaaggacgaACgCUAugGGCCGCaGCa -3'
miRNA:   3'- uuaUGCGGCa----------UGgGGUugCCGGCG-CG- -5'
29981 3' -58 NC_006273.1 + 195499 0.66 0.919107
Target:  5'- --cGCGCuCGgggACCCaguccGCGGCCcuguuGCGCg -3'
miRNA:   3'- uuaUGCG-GCa--UGGGgu---UGCCGG-----CGCG- -5'
29981 3' -58 NC_006273.1 + 606 0.66 0.919107
Target:  5'- --cGCGCuCGgggACCCaguccGCGGCCcuguuGCGCg -3'
miRNA:   3'- uuaUGCG-GCa--UGGGgu---UGCCGG-----CGCG- -5'
29981 3' -58 NC_006273.1 + 34121 0.66 0.919107
Target:  5'- ---uCGCCGcACUCgCAAaaGGCCGCGUa -3'
miRNA:   3'- uuauGCGGCaUGGG-GUUg-CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 105373 0.66 0.919107
Target:  5'- uGAUGuCGCCGUcACCCgAGC--CCGUGCa -3'
miRNA:   3'- -UUAU-GCGGCA-UGGGgUUGccGGCGCG- -5'
29981 3' -58 NC_006273.1 + 235106 0.66 0.919107
Target:  5'- --gACGCggguugugcagUGUGCCCCGG-GGCC-CGCg -3'
miRNA:   3'- uuaUGCG-----------GCAUGGGGUUgCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 195168 0.66 0.919107
Target:  5'- --gACGCggguugugcagUGUGCCCCGG-GGCC-CGCg -3'
miRNA:   3'- uuaUGCG-----------GCAUGGGGUUgCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 196178 0.66 0.919107
Target:  5'- --cACGCUGcUGCCgCUcgGACGGCCGUa- -3'
miRNA:   3'- uuaUGCGGC-AUGG-GG--UUGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 275 0.66 0.919107
Target:  5'- --gACGCggguugugcagUGUGCCCCGG-GGCC-CGCg -3'
miRNA:   3'- uuaUGCG-----------GCAUGGGGUUgCCGGcGCG- -5'
29981 3' -58 NC_006273.1 + 212651 0.66 0.919107
Target:  5'- --aGCGguaCCGUACCUCGGCGacgcuccauGCCgGCGCc -3'
miRNA:   3'- uuaUGC---GGCAUGGGGUUGC---------CGG-CGCG- -5'
29981 3' -58 NC_006273.1 + 1285 0.66 0.919107
Target:  5'- --cACGCUGcUGCCgCUcgGACGGCCGUa- -3'
miRNA:   3'- uuaUGCGGC-AUGG-GG--UUGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 107277 0.66 0.918562
Target:  5'- --gACGCUGUGCcaCCCGgugcugcACGaGCCcGCGCc -3'
miRNA:   3'- uuaUGCGGCAUG--GGGU-------UGC-CGG-CGCG- -5'
29981 3' -58 NC_006273.1 + 122805 0.66 0.917466
Target:  5'- -cUGCGCCa-GCCagguagaagaagcaCCGGCGGCCGCu- -3'
miRNA:   3'- uuAUGCGGcaUGG--------------GGUUGCCGGCGcg -5'
29981 3' -58 NC_006273.1 + 119361 0.66 0.915806
Target:  5'- -cUGCGCCaGgccuUCCCGgggcuggacuuugagGCGGCCGUGUu -3'
miRNA:   3'- uuAUGCGG-Cau--GGGGU---------------UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 136746 0.66 0.915806
Target:  5'- uGUACGCCaccgauccgcacgACCgCGACgaGGUCGCGCg -3'
miRNA:   3'- uUAUGCGGca-----------UGGgGUUG--CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 94666 0.66 0.913561
Target:  5'- --aGCGCCG-GCCCCG-CcGCCGC-Ca -3'
miRNA:   3'- uuaUGCGGCaUGGGGUuGcCGGCGcG- -5'
29981 3' -58 NC_006273.1 + 18504 0.66 0.913561
Target:  5'- --cAUGCUGgGCUCCAucgAgGGCCuGCGCg -3'
miRNA:   3'- uuaUGCGGCaUGGGGU---UgCCGG-CGCG- -5'
29981 3' -58 NC_006273.1 + 34474 0.66 0.913561
Target:  5'- -cUGCGCCucGUGCaCCaGACGGCggaaaGCGCc -3'
miRNA:   3'- uuAUGCGG--CAUG-GGgUUGCCGg----CGCG- -5'
29981 3' -58 NC_006273.1 + 42194 0.66 0.913561
Target:  5'- ---uCGUCGUAauagCCGACGGCCGC-Cg -3'
miRNA:   3'- uuauGCGGCAUgg--GGUUGCCGGCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.