miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29981 3' -58 NC_006273.1 + 8344 0.66 0.895616
Target:  5'- ---cCGCCGUGCCgCCGGuuggUGGCUG-GCg -3'
miRNA:   3'- uuauGCGGCAUGG-GGUU----GCCGGCgCG- -5'
29981 3' -58 NC_006273.1 + 141786 0.66 0.901813
Target:  5'- ---cCGCCGcucaaGCCgCGGuacaGGCCGCGCa -3'
miRNA:   3'- uuauGCGGCa----UGGgGUUg---CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 65183 0.66 0.895616
Target:  5'- --gGCGaCCGUACCagaggcugaGAUcGCCGCGCg -3'
miRNA:   3'- uuaUGC-GGCAUGGgg-------UUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 33330 0.66 0.889207
Target:  5'- --aGCGCCGagcugaACUgCGGCaGCCGCGUg -3'
miRNA:   3'- uuaUGCGGCa-----UGGgGUUGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 197337 0.66 0.889207
Target:  5'- ----aGCUGgACCgCGagcagugggaGCGGCCGCGCu -3'
miRNA:   3'- uuaugCGGCaUGGgGU----------UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 120835 0.66 0.889207
Target:  5'- --gACGgUGgacucgGCCUUAagGCGGCCGCGUg -3'
miRNA:   3'- uuaUGCgGCa-----UGGGGU--UGCCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 234504 0.66 0.889207
Target:  5'- --cAUGCCGUugCgCugggccAUGGCCGCGg -3'
miRNA:   3'- uuaUGCGGCAugGgGu-----UGCCGGCGCg -5'
29981 3' -58 NC_006273.1 + 196101 0.66 0.891796
Target:  5'- --gGCGCCGUGuggcgcgcggcguuuCUggCCAACagcacgGGCCGCGCc -3'
miRNA:   3'- uuaUGCGGCAU---------------GG--GGUUG------CCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 134886 0.66 0.889207
Target:  5'- gGAU-CGCCGUGUgCCAACcgGGCUGCGa -3'
miRNA:   3'- -UUAuGCGGCAUGgGGUUG--CCGGCGCg -5'
29981 3' -58 NC_006273.1 + 117910 0.66 0.889207
Target:  5'- --aACGCCGUAaggaaaCC-GCGGCgGCGUc -3'
miRNA:   3'- uuaUGCGGCAUgg----GGuUGCCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 95224 0.66 0.901813
Target:  5'- --gGCGCCucggACCCCAccaGGCUGUGg -3'
miRNA:   3'- uuaUGCGGca--UGGGGUug-CCGGCGCg -5'
29981 3' -58 NC_006273.1 + 126978 0.66 0.895616
Target:  5'- --gACGUCGUACCugacguggagaCCGcggugGCGGCCG-GCa -3'
miRNA:   3'- uuaUGCGGCAUGG-----------GGU-----UGCCGGCgCG- -5'
29981 3' -58 NC_006273.1 + 171350 0.66 0.889207
Target:  5'- --gAgGCCGcGCCaCCAaaACcGCCGCGCc -3'
miRNA:   3'- uuaUgCGGCaUGG-GGU--UGcCGGCGCG- -5'
29981 3' -58 NC_006273.1 + 57826 0.66 0.889207
Target:  5'- --aACGCUGcgaagACgCCCGGCGucuaauaauacaGCCGCGCc -3'
miRNA:   3'- uuaUGCGGCa----UG-GGGUUGC------------CGGCGCG- -5'
29981 3' -58 NC_006273.1 + 117220 0.66 0.889207
Target:  5'- --cAgGCCGccACgCCGGCGGCUgggGCGCg -3'
miRNA:   3'- uuaUgCGGCa-UGgGGUUGCCGG---CGCG- -5'
29981 3' -58 NC_006273.1 + 232870 0.66 0.889207
Target:  5'- ----aGCUaacUGCCCguGCGGCuCGCGCg -3'
miRNA:   3'- uuaugCGGc--AUGGGguUGCCG-GCGCG- -5'
29981 3' -58 NC_006273.1 + 92178 0.66 0.889207
Target:  5'- --aACGUCGUacaagcuacacACCCCAAaaacCCGCGCg -3'
miRNA:   3'- uuaUGCGGCA-----------UGGGGUUgcc-GGCGCG- -5'
29981 3' -58 NC_006273.1 + 52304 0.66 0.889207
Target:  5'- --aGCGCCaccUugCCCAACG-CCGaCGCc -3'
miRNA:   3'- uuaUGCGGc--AugGGGUUGCcGGC-GCG- -5'
29981 3' -58 NC_006273.1 + 218539 0.66 0.895616
Target:  5'- --gACGCaCGUACaCCUucaugaGGCgGCGCg -3'
miRNA:   3'- uuaUGCG-GCAUG-GGGuug---CCGgCGCG- -5'
29981 3' -58 NC_006273.1 + 219751 0.66 0.889207
Target:  5'- --gGC-CCGUAUCguccugaugaCCAGCGGCCucGCGCu -3'
miRNA:   3'- uuaUGcGGCAUGG----------GGUUGCCGG--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.